PDBsum entry 3f2d Go to PDB code:  Pore analysis for: 3f2d calculated with MOLE 2.0 PDB id 3f2d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.38 2.95 26.1 -1.86 -0.06 20.9 66 2 3 2 2 4 1 0  DG 12 P DC 13 P DG 14 T DT 15 T 2 3.00 3.00 36.8 -1.71 -0.64 25.6 87 3 1 2 1 0 0 0  DG 10 P DG 12 P DC 13 P DA 14 P DA 15 P DA 4 T DC 5 T DG 7 T DT 8 T DT 9 T DG 10 T DC 11 T 3 1.53 1.53 37.0 -2.37 -0.69 22.4 88 4 1 2 1 0 1 0  DA 1 T DT 2 T DA 3 T DA 4 T DC 5 T DG 6 T DG 7 T 4 1.12 1.42 59.0 0.77 0.09 4.1 75 0 3 3 12 2 3 1  DG 10 P DG 11 P DG 10 T DC 16 T 5 1.81 1.95 60.9 -2.41 -0.57 33.4 85 8 4 0 1 0 0 0  DA 15 P DC 16 P DC 17 P 6 1.12 1.45 100.8 0.14 -0.13 9.3 76 4 4 2 14 2 4 1  DG 10 P DG 11 P DG 12 P DC 13 P DA 14 P DA 15 P DG 7 T DT 8 T DT 9 T DG 14 T DT 15 T DC 16 T 7 2.06 2.54 100.9 -1.92 -0.47 21.8 80 8 7 2 4 4 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.