PDBsum entry 3f2d Go to PDB code:  Tunnel analysis for: 3f2d calculated with MOLE 2.0 PDB id 3f2d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.41 37.5 -1.86 -0.01 23.7 74 9 2 0 1 3 1 0  DGT 1456 A DC 16 P DC 17 P DG 6 T DG 7 T DT 8 T 2 1.26 1.40 38.5 -1.86 -0.06 22.9 72 8 2 0 1 3 1 0  DGT 1456 A DC 16 P DC 17 P DG 6 T DG 7 T DT 8 T 3 1.28 1.40 40.8 -2.19 -0.15 30.1 75 11 4 0 1 3 1 0  MN 1 A DGT 1456 A DC 17 P DG 6 T DG 7 T DT 8 T 4 1.27 1.27 41.9 -2.21 -0.19 29.8 75 10 4 0 1 3 1 0  MN 1 A DGT 1456 A DC 16 P DC 17 P DG 6 T DG 7 T DT 8 T 5 1.28 3.27 59.3 -1.39 -0.23 19.2 79 9 2 2 4 5 3 0  DC 17 P DA 4 T DC 5 T DG 6 T DG 7 T DT 8 T 6 1.28 3.39 60.3 -1.45 -0.23 19.6 79 8 2 2 4 5 3 0  DC 16 P DC 17 P DA 4 T DC 5 T DG 6 T DG 7 T DT 8 T 7 1.32 1.34 16.3 -2.15 -0.81 20.8 85 2 4 1 1 0 0 0   8 1.30 1.40 16.4 -1.40 -0.68 16.8 80 2 4 1 2 0 0 0   9 1.27 2.40 16.5 -1.22 0.08 22.3 77 2 2 2 4 1 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.