PDBsum entry 3ebb Go to PDB code:  Pore analysis for: 3ebb calculated with MOLE 2.0 PDB id 3ebb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.86 3.02 49.2 -1.83 -0.72 20.6 83 6 9 4 3 0 1 0   2 3.60 3.76 52.6 -2.23 -0.75 24.9 85 5 9 5 3 0 1 0   3 3.59 3.80 54.2 -2.06 -0.68 23.9 82 7 8 4 4 0 1 0   4 2.55 2.77 58.7 -2.04 -0.71 21.1 86 6 7 8 3 0 2 0   5 2.87 3.04 59.2 -2.25 -0.80 24.0 78 6 10 5 0 0 2 0   6 3.54 3.54 59.2 -1.93 -0.74 20.0 84 6 9 7 2 0 1 0   7 2.87 3.04 60.7 -2.05 -0.71 23.0 76 8 9 4 1 0 2 0   8 3.54 3.54 60.8 -1.87 -0.69 19.8 82 8 8 6 3 0 1 0   9 2.56 2.78 64.6 -1.77 -0.69 17.2 86 6 7 9 2 0 2 0   10 2.53 2.73 64.6 -2.06 -0.75 20.4 80 6 8 7 0 0 3 0   11 2.87 3.03 67.1 -2.43 -0.79 25.1 81 9 12 8 2 0 1 0   12 3.54 3.54 67.1 -2.16 -0.74 22.1 86 9 11 10 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.