PDBsum entry 3ebb Go to PDB code:  Tunnel analysis for: 3ebb calculated with MOLE 2.0 PDB id 3ebb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.92 16.6 0.67 0.22 3.8 61 1 0 1 2 4 0 1  MSE 676 B MSE 677 B 2 1.60 1.60 15.7 0.29 0.08 5.0 64 1 1 1 2 4 0 1  MSE 676 C MSE 677 C 3 1.58 3.16 17.4 0.60 0.20 4.5 56 1 1 0 2 5 0 2  MSE 676 C MSE 677 C 4 1.08 1.21 22.9 1.59 0.45 2.3 84 1 0 3 6 1 0 0  MSE 684 D 5 1.20 1.80 17.3 0.32 0.15 4.8 72 1 0 1 3 0 3 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.