PDBsum entry 3d6d Go to PDB code:  Pore analysis for: 3d6d calculated with MOLE 2.0 PDB id 3d6d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.63 3.67 53.2 -0.56 0.06 14.1 77 6 3 5 7 4 0 1   2 1.64 3.67 53.6 -1.67 -0.21 19.1 74 4 3 4 3 3 1 0   3 1.34 2.00 57.0 0.17 0.15 13.9 79 5 4 2 6 2 1 0   4 1.70 1.81 82.0 -0.76 -0.07 16.4 78 6 5 6 6 4 2 1   5 1.34 1.95 85.5 0.12 0.24 9.9 77 8 2 5 12 5 0 1   6 1.32 2.00 114.5 -0.12 0.14 12.4 78 8 4 6 11 5 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.