PDBsum entry 3d6d Go to PDB code:  Tunnel analysis for: 3d6d calculated with MOLE 2.0 PDB id 3d6d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.65 27.0 1.65 0.49 4.1 71 1 2 0 7 3 1 0   2 1.50 1.52 35.6 0.68 0.25 11.5 76 4 3 1 6 2 0 1   3 1.34 1.58 35.8 1.91 0.66 5.0 73 2 2 0 9 3 0 1   4 1.34 1.34 36.2 1.36 0.38 4.7 77 3 1 2 8 2 0 1   5 1.42 3.27 40.2 -0.02 0.13 9.7 73 4 2 3 5 3 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.