PDBsum entry 3c9a Go to PDB code:  Pore analysis for: 3c9a calculated with MOLE 2.0 PDB id 3c9a Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.02 2.02 25.3 -1.06 -0.32 19.0 82 3 4 3 4 2 0 0   2 1.32 2.62 27.1 -0.94 -0.59 9.3 83 1 3 4 4 0 1 1   3 1.52 1.68 28.0 -1.26 -0.43 13.5 79 3 2 3 2 2 0 1   4 1.26 1.54 28.6 -1.07 -0.41 8.3 79 2 2 3 1 2 0 1  BR 5 D 5 1.65 1.65 38.9 -0.12 -0.11 9.2 80 1 3 4 7 2 2 1   6 1.27 1.50 40.0 -0.35 -0.13 9.7 79 2 1 5 9 3 1 1  BR 5 D 7 1.34 2.61 40.4 -1.10 -0.51 13.8 80 2 4 4 6 0 1 1   8 1.26 1.54 43.6 -0.89 -0.41 8.4 83 3 1 5 2 3 0 0  BR 5 D 9 1.57 1.76 47.3 -0.82 -0.32 13.0 80 3 5 5 3 4 0 1  BR 5 D 10 1.24 1.54 48.4 -0.78 -0.35 9.2 82 4 1 5 3 3 0 0  BR 5 D 11 1.24 1.48 48.5 -0.86 -0.31 13.7 84 3 3 6 5 3 0 0  BR 5 D 12 1.24 1.50 51.3 -1.10 -0.30 16.9 79 4 4 4 6 4 0 0  BR 5 D 13 1.26 1.49 53.3 -0.81 -0.26 15.6 83 4 3 6 6 3 0 0  BR 5 D 14 1.52 1.66 64.5 -1.01 -0.36 13.0 81 4 5 6 3 3 0 1   15 1.68 1.67 135.5 -1.50 -0.48 18.5 82 8 10 10 9 2 2 1  BR 11 B 16 1.65 1.63 153.4 -1.32 -0.39 15.8 80 7 6 8 12 2 3 1  BR 11 B 17 1.17 1.19 78.6 -2.13 -0.37 27.6 82 7 3 2 2 1 1 0  BR 18 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.