PDBsum entry 3c9a Go to PDB code:  Tunnel analysis for: 3c9a calculated with MOLE 2.0 PDB id 3c9a Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.59 23.9 -1.12 -0.39 8.8 84 1 0 4 4 3 0 0  BR 5 D 2 1.13 1.60 32.5 -0.98 -0.42 7.5 79 2 2 4 1 4 0 1  BR 5 D 3 1.13 1.53 38.7 -1.02 -0.35 12.5 80 2 3 3 4 4 0 0  BR 5 D 4 1.14 1.62 40.9 -0.42 -0.20 8.0 77 2 1 4 8 4 1 1  BR 5 D 5 1.48 1.56 15.2 -0.54 -0.39 8.3 62 2 0 0 0 0 1 2  BR 6 A 6 1.36 2.37 16.1 -0.50 -0.22 3.5 78 0 1 2 4 0 2 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.