PDBsum entry 3c3c

Pore analysis for: 3c3c calculated with

MOLE 2.0

PDB id

3c3c

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

4 pores, coloured by radius

6 pores, coloured by radius

6 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.35

1.76

40.1

-0.84

-0.24

8.1

82

2

1

3

1

2

1

0

2

2.98

4.14

43.3

-1.83

-0.34

21.0

81

6

2

4

5

2

1

0

3

1.29

1.58

51.6

-1.46

-0.41

15.4

78

4

3

2

2

2

1

0

3PG 417 B

4

2.63

2.81

25.3

-0.95

-0.33

12.3

76

2

2

2

2

1

2

0

MG 417 A 3PG 418 A CDP 419 A

5

1.68

1.97

26.8

-1.68

-0.37

12.7

80

3

1

2

1

1

1

0

3PG 418 A CDP 419 A

6

2.63

2.80

29.2

-1.49

-0.21

14.5

80

3

1

2

3

2

1

0

3PG 418 A CDP 419 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.