PDBsum entry 3c3c

Tunnel analysis for: 3c3c calculated with

MOLE 2.0

PDB id

3c3c

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.16

1.33

29.6

-0.50

-0.22

10.7

78

3

2

3

6

1

1

0

2

1.16

1.33

36.3

-0.59

-0.22

11.8

75

3

1

3

6

2

2

0

3PG 417 B

3

1.41

1.57

17.4

0.93

-0.02

2.1

65

0

0

0

5

3

1

1

CDP 419 A

4

1.54

1.70

18.7

0.37

-0.26

4.2

68

0

1

0

3

3

2

1

CDP 419 A

5

1.16

3.01

26.7

-0.14

0.02

10.3

72

2

2

1

6

1

1

0

MG 417 A CDP 419 A

6

1.18

1.19

28.9

-0.50

-0.17

9.4

77

2

2

3

5

1

1

0

MG 417 A CDP 419 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.