spacer
spacer

PDBsum entry 3bsn

Go to PDB code: 
Top Page protein dna_rna ligands metals pores links
Pore analysis for: 3bsn calculated with MOLE 2.0 PDB id
3bsn
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.79 2.02 33.3 -3.12 -0.63 38.5 83 8 3 1 0 0 0 0  N5C 514 A G 2 P C 3 P C 4 P C 5 P G 7 P G 8 P C 4
T C 5 T G 6 T GOL 10 T
2 1.42 1.68 50.2 -1.15 -0.34 19.1 76 7 3 2 4 2 0 0  N5C 514 A C 5 P G 6 P G 7 P GOL 9 P
3 1.67 1.68 59.9 -1.21 -0.46 12.9 81 5 1 3 3 1 2 0  G 2 P C 3 P C 4 P C 5 P U 1 T C 5 T G 6 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer