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PDBsum entry 3b3q

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Cell adhesion PDB id
3b3q
Contents
Protein chains
536 a.a.
187 a.a.
Ligands
NAG-NAG ×3
NAG
Metals
_CA ×2
Waters ×1552

References listed in PDB file
Key reference
Title Structural basis for synaptic adhesion mediated by neuroligin-Neurexin interactions.
Authors X.Chen, H.Liu, A.H.Shim, P.J.Focia, X.He.
Ref. Nat Struct Biol, 2008, 15, 50-56. [DOI no: 10.1038/nsmb1350]
PubMed id 18084303
Abstract
The heterophilic synaptic adhesion molecules neuroligins and neurexins are essential for establishing and maintaining neuronal circuits by modulating the formation and maturation of synapses. The neuroligin-neurexin adhesion is Ca2+-dependent and regulated by alternative splicing. We report a structure of the complex at a resolution of 2.4 A between the mouse neuroligin-1 (NL1) cholinesterase-like domain and the mouse neurexin-1beta (NX1beta) LNS (laminin, neurexin and sex hormone-binding globulin-like) domain. The structure revealed a delicate neuroligin-neurexin assembly mediated by a hydrophilic, Ca2+-mediated and solvent-supplemented interface, rendering it capable of being modulated by alternative splicing and other regulatory factors. Thermodynamic data supported a mechanism wherein splicing site B of NL1 acts by modulating a salt bridge at the edge of the NL1-NX1beta interface. Mapping neuroligin mutations implicated in autism indicated that most such mutations are structurally destabilizing, supporting deficient neuroligin biosynthesis and processing as a common cause for this brain disorder.
Figure 1.
(a) His-tag pull-down assay showing effects of mutagenesis of NX1 surface residues on NL1 binding.
Figure 5.
The mutated residues, NL1 Asp106 (corresponding to the NL4 G99S mutation), NL1 Lys414 (corresponding to the NL4 K378R mutation), NL1 Arg473 (corresponding to the NL3 R451C mutation) and NL1 Val439 (corresponding to the NL4 V403M mutation), are colored green and shown in space-filling representation, and are mapped on the NL1–NX1 complex (ribbons). These residues are away from the binding and dimerization interfaces, and are mostly buried.
The above figures are reprinted by permission from Macmillan Publishers Ltd: Nat Struct Biol (2008, 15, 50-56) copyright 2008.
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