PDBsum entry 3a98 Go to PDB code:  Pore analysis for: 3a98 calculated with MOLE 2.0 PDB id 3a98 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.75 1.78 25.4 -0.31 0.18 7.8 59 2 0 2 3 4 0 0  MSE 120 A MSE 121 A MSE 692 B 2 1.43 1.44 29.5 -0.93 -0.22 14.2 79 3 1 5 4 1 1 1   3 1.72 1.73 29.5 -0.30 0.13 9.8 53 2 1 1 2 5 0 0  MSE 120 A MSE 121 A MSE 692 B 4 1.72 2.00 30.0 -0.67 -0.16 16.0 68 2 4 2 4 3 0 0  MSE 120 C MSE 121 C MSE 125 C MSE 692 D 5 1.73 1.75 36.4 -1.36 -0.12 19.9 73 4 2 2 1 3 0 0  MSE 692 B 6 1.51 1.97 43.5 -1.30 -0.37 14.1 76 3 3 5 3 1 1 2  MSE 54 A 7 1.69 1.69 49.3 -0.81 0.00 14.3 65 4 2 2 2 5 0 0  MSE 120 A MSE 121 A MSE 692 B 8 2.93 3.84 57.5 -2.33 -0.43 26.6 81 8 2 5 3 2 0 0   9 1.39 1.39 74.2 -1.29 -0.32 17.1 82 7 3 8 7 2 1 1  MSE 678 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.