PDBsum entry 3a98 Go to PDB code:  Tunnel analysis for: 3a98 calculated with MOLE 2.0 PDB id 3a98 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.56 1.69 18.5 -0.31 0.24 7.4 63 1 0 1 3 3 0 0  MSE 120 C MSE 121 C 2 1.71 1.98 18.6 -0.61 0.01 7.5 62 1 0 2 2 3 0 0  MSE 120 C MSE 121 C MSE 692 D 3 1.54 1.67 18.7 -0.59 -0.02 11.6 71 1 2 2 2 2 0 0  MSE 120 C MSE 121 C 4 1.72 1.99 18.8 -0.89 -0.22 10.8 70 1 2 3 1 2 0 0  MSE 120 C MSE 121 C MSE 692 D 5 1.49 1.50 19.0 -0.49 0.21 12.7 68 2 1 1 3 2 0 0  MSE 121 C MSE 692 D 6 1.79 2.00 21.0 -0.86 0.02 19.1 69 1 2 3 4 2 0 0  MSE 121 C MSE 125 C MSE 692 D 7 1.57 1.59 21.3 -0.96 0.24 15.5 66 3 1 2 1 3 0 0  MSE 121 C MSE 692 D 8 1.54 1.68 22.2 -0.17 0.11 14.6 70 1 2 2 5 2 0 0  MSE 121 C MSE 125 C MSE 692 D 9 1.13 1.59 16.7 -0.57 -0.24 18.2 83 3 2 0 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.