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PDBsum entry 3khv

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Hydrolase PDB id
3khv

 

 

 

 

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Contents
Protein chain
239 a.a. *
Ligands
4AL
SO4
PGE
Waters ×260
* Residue conservation analysis
PDB id:
3khv
Name: Hydrolase
Title: Crystal structures of urokinase-type plasminogen activator in complex with 4-(aminomethyl) benzoic acid and 4-(aminomethyl-phenyl)-methanol
Structure: Urokinase-type plasminogen activator. Chain: a. Fragment: c-terminal domain, unp residues 179-431. Synonym: u-plasminogen activator, upa, urokinase-type plasminogen activator chain b. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: plau. Expressed in: pichia pastoris. Expression_system_taxid: 4922.
Resolution:
2.35Å     R-factor:   0.228     R-free:   0.293
Authors: L.-G.Jiang,G.-X.Zhao,X.-B.Bian,C.Yuan,Z.-X.Huang,M.-D.Huang
Key ref: L.-G.Jiang et al. (2009). Crystal structures of urokinase-Type plasminogen activator in complex with 4-(Aminomethyl) benzoic acid and 4-(Aminomethyl-Phenyl)-Methanol. Chin j struct chem, 28, 253.
Date:
30-Oct-09     Release date:   01-Dec-09    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P00749  (UROK_HUMAN) -  Urokinase-type plasminogen activator from Homo sapiens
Seq:
Struc:
431 a.a.
239 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.3.4.21.73  - u-plasminogen activator.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Specific cleavage of Arg-|-Val bond in plasminogen to form plasmin.

 

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