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PDBsum entry 2w8h
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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2w8h calculated with MOLE 2.0 PDB id
2w8h
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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107 tunnels, coloured by tunnel radius 108 tunnels, coloured by tunnel radius 108 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.36 148.5 -1.30 0.02 13.8 75 17 0 11 8 7 7 4  MTN 1335 A MTN 1335 C MTN 1335 D MTN 1335 E
2 1.31 1.43 22.5 -0.72 -0.31 5.3 77 1 1 2 1 2 1 0  
3 1.32 1.46 23.8 -0.55 -0.30 5.6 80 0 1 2 3 2 1 0  
4 1.32 1.45 23.9 -0.71 -0.24 6.9 79 1 1 2 2 2 1 0  
5 1.31 1.42 24.0 -0.20 -0.11 7.3 92 2 1 1 2 1 0 0  
6 1.32 1.44 24.1 -0.37 -0.10 8.8 92 2 1 1 2 1 0 0  
7 1.30 1.39 24.5 -0.39 -0.08 9.4 88 2 1 1 2 2 0 0  
8 1.28 1.37 24.6 -0.20 -0.11 8.4 93 1 1 1 3 1 0 0  
9 1.29 1.44 24.7 -0.48 -0.17 9.8 86 2 1 0 2 2 0 0  
10 1.31 1.41 25.1 -0.48 -0.25 8.2 90 2 1 2 2 2 0 0  
11 1.32 1.42 25.4 -0.68 -0.20 7.5 76 1 1 2 2 3 1 0  
12 1.29 1.40 25.5 -0.79 -0.32 7.7 72 1 1 1 2 3 1 0  
13 1.33 1.47 25.7 -0.60 -0.27 5.7 76 1 1 2 2 3 1 0  
14 1.14 1.16 27.4 -0.52 -0.19 9.2 90 1 1 1 3 1 1 0  
15 1.17 1.19 27.5 -0.47 -0.20 8.8 90 1 1 1 3 1 1 0  
16 1.16 1.16 27.5 -0.66 -0.19 9.8 89 2 1 1 2 1 1 0  
17 1.15 1.15 28.6 -0.46 -0.21 8.9 90 1 1 1 3 1 1 0  
18 1.18 1.23 29.3 -0.54 -0.19 8.8 86 2 1 1 2 2 1 0  
19 1.18 1.21 29.4 -0.64 -0.21 9.8 86 2 1 1 2 2 1 0  
20 1.07 1.37 30.2 -0.61 -0.20 9.6 86 2 1 1 2 2 1 0  
21 1.21 2.44 36.5 -1.01 -0.45 8.3 89 0 3 6 2 2 1 0  
22 1.21 3.00 37.4 -0.99 -0.42 8.5 89 0 3 6 3 2 1 0  
23 1.23 2.42 37.7 -0.94 -0.41 7.6 89 0 3 6 3 2 1 0  
24 1.20 2.26 37.7 -1.02 -0.40 9.9 89 0 3 6 3 2 1 0  
25 1.14 2.63 37.9 -0.92 -0.42 8.7 89 0 3 6 3 2 1 0  
26 1.13 2.84 38.4 -0.69 -0.30 9.9 96 1 3 5 3 1 0 0  
27 1.17 2.89 38.5 -0.60 -0.25 8.5 96 1 3 5 3 1 0 0  
28 1.22 2.30 38.5 -0.89 -0.42 8.8 89 0 3 6 3 2 1 0  
29 1.16 2.50 38.9 -0.68 -0.35 8.4 97 1 3 6 3 1 0 0  
30 1.14 2.77 39.3 -0.70 -0.32 9.9 96 1 3 5 3 1 0 0  
31 1.24 2.28 39.6 -0.58 -0.30 8.8 96 1 3 5 3 1 0 0  
32 1.21 2.25 40.4 -0.50 -0.33 8.8 96 1 3 5 3 1 0 0  
33 1.19 1.20 42.6 -0.80 -0.38 9.4 94 1 3 5 3 1 1 0  
34 1.19 1.21 42.7 -0.75 -0.36 9.2 94 1 3 5 3 1 1 0  
35 1.14 1.17 42.9 -0.80 -0.36 9.6 94 1 3 5 3 1 1 0  
36 1.22 2.83 43.0 -0.41 -0.20 7.2 89 3 1 2 4 2 1 0  
37 1.16 1.18 43.2 -0.84 -0.38 10.3 94 1 3 5 3 1 1 0  
38 1.15 2.72 43.2 -0.86 -0.38 10.4 94 1 3 5 3 1 1 0  
39 1.16 2.75 43.3 -0.85 -0.38 10.3 94 1 3 5 3 1 1 0  
40 1.26 2.96 43.4 -0.32 -0.19 6.6 90 2 1 2 5 2 1 0  
41 1.18 2.67 43.8 -0.73 -0.38 9.8 94 1 3 5 3 1 1 0  
42 1.25 2.78 43.8 -0.51 -0.25 7.1 90 3 1 3 4 2 1 0  
43 1.25 2.74 43.9 -0.56 -0.29 5.7 84 2 1 3 4 3 2 0  
44 1.05 1.32 44.1 -0.76 -0.37 9.2 94 1 3 5 3 1 1 0  
45 1.24 2.86 45.0 -0.78 -0.40 6.5 80 2 1 2 3 4 2 0  
46 1.26 2.80 45.4 -0.31 -0.21 6.9 90 2 1 2 5 2 1 0  
47 1.21 2.74 45.9 -0.55 -0.25 5.8 82 2 1 3 4 4 2 0  
48 1.30 1.41 46.0 -0.63 -0.29 6.3 82 2 1 3 4 4 2 0  
49 1.27 2.64 46.1 -0.60 -0.30 5.8 82 2 1 3 4 4 2 0  
50 1.24 2.79 46.6 -0.43 -0.20 7.8 88 3 1 2 4 3 1 0  
51 1.17 1.20 47.9 -0.53 -0.27 7.3 88 3 1 2 4 2 2 0  
52 1.24 2.26 48.2 -0.86 -0.23 8.5 82 2 2 5 3 3 2 0  
53 1.17 1.18 48.1 -0.58 -0.25 8.1 88 3 1 2 4 2 2 0  
54 1.21 1.23 48.8 -0.55 -0.27 8.0 89 2 1 2 5 2 2 0  
55 1.05 1.46 49.1 -0.46 -0.25 7.2 89 2 1 2 5 2 2 0  
56 1.23 2.64 49.4 -0.89 -0.27 8.9 83 2 2 5 4 3 2 0  
57 1.20 2.55 49.7 -0.87 -0.23 9.3 83 2 2 5 4 3 2 0  
58 1.18 1.23 49.6 -0.61 -0.26 8.8 86 3 1 2 4 3 2 0  
59 1.19 2.18 49.9 -0.85 -0.24 9.4 83 2 2 5 4 3 2 0  
60 1.18 1.22 49.8 -0.62 -0.24 8.1 86 3 1 2 4 3 2 0  
61 1.26 2.89 49.8 -0.83 -0.23 8.6 83 2 2 5 4 3 2 0  
62 1.21 1.25 49.9 -0.67 -0.29 8.2 85 3 1 1 4 3 2 0  
63 1.22 2.46 50.7 -0.59 -0.23 8.7 91 3 2 5 4 2 1 0  
64 1.21 2.24 51.4 -0.52 -0.13 9.0 90 3 2 4 4 2 1 0  
65 1.24 2.61 51.8 -0.57 -0.17 9.7 89 3 2 4 4 2 1 0  
66 1.22 1.23 54.6 -0.74 -0.23 9.6 88 3 2 4 4 2 2 0  
67 1.14 1.16 54.6 -0.73 -0.20 9.9 88 3 2 4 4 2 2 0  
68 1.15 1.15 55.1 -0.69 -0.21 9.7 88 3 2 4 4 2 2 0  
69 1.22 1.28 54.9 -0.80 -0.21 9.8 88 3 2 4 4 2 2 0  
70 1.16 1.16 55.2 -0.80 -0.22 10.8 88 3 2 4 4 2 2 0  
71 1.19 2.63 60.0 -0.59 -0.37 7.6 93 2 3 7 5 2 1 0  
72 1.27 1.40 60.4 -0.57 -0.31 8.1 93 2 3 6 5 2 1 0  
73 1.23 1.25 63.6 -0.70 -0.37 8.2 92 2 3 6 5 2 2 0  
74 1.22 1.23 63.6 -0.77 -0.35 8.9 92 2 3 6 5 2 2 0  
75 1.16 1.21 63.7 -0.70 -0.35 8.4 92 2 3 6 5 2 2 0  
76 1.31 1.42 64.7 -0.56 -0.28 5.8 85 3 1 4 6 4 3 0  
77 1.26 2.65 64.9 -0.60 -0.31 6.0 85 3 1 4 6 4 3 0  
78 1.28 1.37 65.0 -0.45 -0.29 6.6 90 3 1 4 7 3 2 0  
79 1.29 2.52 65.3 -0.46 -0.23 7.1 88 4 1 3 6 3 2 0  
80 1.23 2.74 65.8 -0.50 -0.27 7.1 86 4 1 2 6 4 2 0  
81 1.22 2.79 65.6 -0.43 -0.23 6.6 87 4 1 3 6 4 2 0  
82 1.25 2.69 66.5 -0.56 -0.28 6.3 83 3 1 4 6 5 3 0  
83 1.29 2.70 66.4 -0.65 -0.35 6.5 82 3 1 3 6 5 3 0  
84 1.23 2.86 66.6 -0.56 -0.30 6.0 83 3 1 4 6 5 3 0  
85 1.28 2.86 66.6 -0.46 -0.23 7.2 87 4 1 3 6 4 2 0  
86 1.22 1.26 68.5 -0.50 -0.27 6.8 88 3 1 3 7 3 3 0  
87 1.21 1.24 68.5 -0.61 -0.28 7.6 87 4 1 3 6 3 3 0  
88 1.21 1.21 69.3 -0.53 -0.29 7.2 88 3 1 3 7 3 3 0  
89 1.23 1.27 70.4 -0.58 -0.28 7.7 86 4 1 3 6 4 3 0  
90 1.25 1.41 70.4 -0.56 -0.21 8.1 89 4 2 5 6 3 2 0  
91 1.24 1.28 70.5 -0.58 -0.26 7.4 86 4 1 3 6 4 3 0  
92 1.15 2.10 75.2 -0.64 -0.25 8.4 88 4 2 5 6 3 3 0  
93 1.23 2.89 78.6 -0.69 -0.36 6.2 88 2 3 8 7 4 3 0  
94 1.17 2.91 79.5 -0.63 -0.31 7.9 91 3 3 7 7 3 2 0  
95 1.26 2.83 84.3 -0.52 -0.26 7.0 88 5 1 4 8 4 3 0  
96 1.33 1.42 85.9 -0.63 -0.32 6.1 84 4 1 5 7 6 4 0  
97 1.13 1.29 87.8 -0.57 -0.28 5.9 88 3 2 6 8 4 4 0  
98 1.27 2.78 87.2 -0.64 -0.35 6.3 83 4 1 4 8 6 4 0  
99 1.32 1.48 87.2 -0.41 -0.25 6.2 87 5 1 4 8 5 3 0  
100 1.30 2.46 87.1 -0.57 -0.29 5.8 84 4 1 5 8 6 4 0  
101 1.31 2.57 87.2 -0.56 -0.32 5.8 84 4 1 5 8 6 4 0  
102 1.27 2.85 87.3 -0.46 -0.26 6.6 87 5 1 4 8 5 3 0  
103 1.20 1.23 89.1 -0.57 -0.29 7.0 87 5 1 4 8 4 4 0  
104 1.18 1.17 90.7 -0.56 -0.28 6.9 86 5 1 4 8 5 4 0  
105 1.18 1.16 91.2 -0.48 -0.28 6.4 86 5 1 4 8 5 4 0  
106 1.21 1.60 95.6 -0.64 -0.27 8.1 88 5 2 6 8 4 4 0  
107 1.22 1.22 104.6 -0.65 -0.36 7.5 90 4 3 8 9 4 4 0  
108 1.41 1.57 111.5 -0.56 -0.24 7.3 88 6 2 7 10 5 4 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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