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PDBsum entry 2vdo
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Pore analysis for: 2vdo calculated with  MOLE 2.0
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PDB id
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2vdo
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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1 pore,
coloured by radius |
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6 pores,
coloured by radius
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6 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.35 |
3.92 |
37.1 |
-1.35 |
-0.50 |
14.1 |
82 |
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2 |
3 |
5 |
2 |
4 |
0 |
0 |
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2 |
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2.10 |
2.17 |
38.1 |
-1.91 |
-0.33 |
28.3 |
88 |
4 |
1 |
2 |
3 |
0 |
0 |
0 |
GOL 1453 A NAG 3015 A
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3 |
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3.44 |
3.56 |
99.3 |
-1.97 |
-0.48 |
23.6 |
74 |
4 |
4 |
3 |
1 |
1 |
3 |
0 |
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4 |
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1.31 |
1.82 |
222.9 |
-1.32 |
-0.44 |
13.5 |
85 |
10 |
6 |
20 |
11 |
7 |
5 |
0 |
NAG 3015 A NAG 3249 A
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5 |
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1.26 |
2.10 |
240.4 |
-1.49 |
-0.38 |
16.4 |
84 |
14 |
5 |
19 |
10 |
7 |
4 |
0 |
NAG 3015 A NAG 3249 A
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6 |
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1.72 |
1.91 |
35.8 |
-1.47 |
-0.08 |
10.6 |
78 |
1 |
1 |
3 |
5 |
1 |
0 |
0 |
NAG 1 D NAG 2 D MAN 3 D MAN 4 D MAN 5 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program