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PDBsum entry 2vdo
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Tunnel analysis for: 2vdo calculated with  MOLE 2.0
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PDB id
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2vdo
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.27 |
1.48 |
23.0 |
-1.08 |
-0.24 |
14.7 |
73 |
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1 |
4 |
2 |
2 |
4 |
1 |
0 |
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GOL 1462 B
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2 |
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1.27 |
1.46 |
27.6 |
-0.75 |
-0.07 |
11.4 |
75 |
1 |
2 |
2 |
4 |
4 |
0 |
0 |
NAG 1 D
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3 |
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1.54 |
2.66 |
15.4 |
-0.33 |
-0.51 |
4.4 |
98 |
1 |
0 |
4 |
1 |
0 |
0 |
0 |
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4 |
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1.49 |
2.73 |
16.9 |
-0.18 |
-0.55 |
1.9 |
101 |
0 |
0 |
4 |
1 |
0 |
0 |
0 |
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5 |
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1.51 |
2.71 |
16.9 |
0.01 |
-0.43 |
2.0 |
99 |
0 |
0 |
3 |
1 |
0 |
0 |
0 |
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6 |
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1.23 |
1.52 |
15.8 |
-1.24 |
-0.73 |
6.3 |
108 |
1 |
0 |
5 |
0 |
0 |
0 |
0 |
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7 |
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1.50 |
1.56 |
21.2 |
-0.93 |
-0.50 |
6.0 |
83 |
1 |
1 |
2 |
2 |
1 |
1 |
0 |
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8 |
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1.22 |
2.56 |
15.1 |
-1.15 |
-0.15 |
23.1 |
67 |
1 |
3 |
0 |
2 |
2 |
2 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program