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PDBsum entry 2v4r

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 2v4r calculated with MOLE 2.0 PDB id
2v4r
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.30 1.50 17.3 2.38 1.00 9.1 87 2 0 0 4 0 0 0  DT 12 P DC 13 P DC 4 T M1G 5 T DG 6 T DA 7 T
2 1.29 1.49 22.9 0.90 0.20 11.7 91 2 1 0 5 0 0 0  DC 4 T M1G 5 T DG 6 T
3 1.30 1.50 29.6 -1.36 -0.11 27.2 94 4 0 2 2 0 0 0  DG 5 P DG 9 P DA 10 P DA 7 T DA 8 T DT 9 T DC 10 T
4 1.30 1.49 30.8 -0.87 -0.08 22.5 94 4 0 2 2 0 0 0  DG 5 P DG 9 P DA 10 P DA 7 T DA 8 T DT 9 T DC 10
T DC 11 T
5 1.30 1.48 46.0 -0.59 0.16 18.6 88 6 0 2 5 1 0 0  DGT 404 A DC 4 T M1G 5 T DG 6 T DA 7 T
6 1.42 3.02 23.3 1.81 0.55 10.7 82 2 1 0 5 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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