 |
PDBsum entry 2uvw
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2uvw calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2uvw
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 tunnels,
coloured by tunnel radius |
|
5 tunnels,
coloured by
tunnel radius
|
5 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.55 |
1.57 |
19.7 |
1.91 |
0.63 |
8.3 |
93 |
|
1 |
1 |
0 |
4 |
0 |
0 |
0 |
|
DT 12 P DC 13 P DA 3 T DC 4 T 8OG 5 T DG 6 T DA 7
T
|
 |
|
2 |
 |
1.54 |
1.56 |
19.9 |
-0.44 |
0.13 |
22.4 |
97 |
3 |
0 |
2 |
2 |
0 |
0 |
0 |
DG 9 P DA 10 P DA 7 T DA 8 T DT 9 T DC 10 T
|
|
3 |
 |
1.53 |
1.55 |
28.4 |
-1.06 |
-0.05 |
25.4 |
94 |
4 |
0 |
2 |
2 |
0 |
0 |
0 |
DG 5 P DA 6 P DG 9 P DA 10 P DA 7 T DA 8 T DT 9 T
DC 10 T
|
|
4 |
 |
1.52 |
1.55 |
30.0 |
1.00 |
0.30 |
11.2 |
88 |
3 |
1 |
0 |
6 |
0 |
1 |
0 |
DC 4 T 8OG 5 T DG 6 T DA 7 T
|
 |
5 |
 |
1.53 |
1.54 |
46.3 |
0.39 |
0.21 |
12.6 |
88 |
4 |
1 |
1 |
7 |
1 |
0 |
0 |
DGT 1000 A DA 14 P DC 4 T 8OG 5 T DG 6 T DA 7 T
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program