 |
PDBsum entry 2pcc
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2pcc calculated with MOLE 2.0
|
PDB id
|
|
|
|
2pcc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
11 pores,
coloured by radius |
 |
12 pores,
coloured by radius
|
12 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.34 |
1.37 |
26.8 |
-2.34 |
-0.71 |
27.4 |
78 |
 |
4 |
5 |
1 |
0 |
1 |
1 |
0 |
 |
|
 |
 |
2 |
 |
1.48 |
1.65 |
27.0 |
-0.36 |
-0.27 |
8.2 |
85 |
2 |
2 |
5 |
6 |
1 |
0 |
1 |
HEM 104 B
|
 |
3 |
 |
2.03 |
2.63 |
27.3 |
-2.44 |
-0.49 |
26.9 |
76 |
4 |
4 |
2 |
0 |
3 |
1 |
0 |
|
 |
4 |
 |
1.54 |
1.73 |
27.6 |
-0.20 |
-0.20 |
8.7 |
82 |
2 |
2 |
4 |
4 |
1 |
0 |
1 |
HEM 104 D
|
 |
5 |
 |
2.05 |
2.14 |
27.7 |
-2.17 |
-0.51 |
33.2 |
73 |
9 |
5 |
1 |
2 |
2 |
0 |
0 |
|
 |
6 |
 |
1.37 |
1.37 |
32.5 |
-1.91 |
-0.63 |
17.3 |
82 |
4 |
3 |
3 |
1 |
1 |
1 |
0 |
|
 |
7 |
 |
2.05 |
2.14 |
37.3 |
-2.54 |
-0.50 |
36.7 |
73 |
12 |
5 |
1 |
2 |
2 |
0 |
0 |
|
 |
8 |
 |
2.17 |
2.33 |
40.6 |
-2.75 |
-0.54 |
33.7 |
74 |
9 |
7 |
0 |
0 |
1 |
2 |
0 |
|
 |
9 |
 |
1.34 |
1.37 |
60.5 |
-2.65 |
-0.65 |
30.2 |
77 |
9 |
7 |
3 |
0 |
2 |
2 |
0 |
|
 |
10 |
 |
1.35 |
1.35 |
60.6 |
-2.64 |
-0.64 |
30.3 |
76 |
8 |
7 |
3 |
1 |
2 |
2 |
0 |
|
 |
11 |
 |
2.21 |
2.35 |
61.6 |
-2.46 |
-0.51 |
33.9 |
75 |
11 |
9 |
1 |
2 |
2 |
0 |
0 |
|
 |
12 |
 |
1.36 |
1.36 |
68.6 |
-2.22 |
-0.57 |
27.3 |
76 |
11 |
6 |
4 |
3 |
3 |
1 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |