PDBsum entry 2p5o Go to PDB code:  Pore analysis for: 2p5o calculated with MOLE 2.0 PDB id 2p5o Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   22 pores, coloured by radius 21 pores, coloured by radius 21 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.53 3.78 26.9 -0.95 -0.43 17.0 82 1 2 2 2 2 0 0  DC 1 I DG 2 I DC 4 I DT 5 I DT 111 J 2 3.92 4.43 27.3 0.16 0.41 14.6 80 2 1 1 4 2 0 0   3 1.47 2.19 39.9 0.78 0.23 9.3 77 3 1 3 10 3 1 0   4 1.53 1.72 43.2 -2.15 -0.42 21.9 84 6 1 5 1 1 1 0  DC 1 I DG 2 I 3DR 3 I DC 4 I DT 5 I DT 111 J DA 115 J 5 1.46 2.12 48.4 1.04 0.28 6.5 80 2 2 5 13 3 0 0   6 3.19 3.19 53.7 -1.34 -0.58 12.8 79 3 2 2 1 2 0 0  MSE 256 C DG 2 I DC 4 I DT 5 I DT 111 J DA 112 J DA 113 J DG 114 J DA 115 J 7 1.47 2.19 56.5 0.68 0.27 10.7 80 4 2 4 12 3 0 0   8 2.72 3.89 100.9 -1.01 -0.37 16.5 81 9 4 3 4 2 2 0  MSE 900 B DT 6 G DA 7 G DT 8 G DG 9 G DA 10 G DG 103 H DG 104 H 9 2.19 2.19 25.3 -2.08 -0.39 10.1 76 1 0 2 0 2 0 0  MSE 256 A DC 4 E DT 5 E DT 111 F DG 114 F DA 115 F 10 1.24 1.24 25.9 -0.88 -0.34 18.6 69 2 3 1 3 4 1 0  MSE 85 A DG 16 K DC 17 K DG 18 K 11 1.21 1.21 26.6 -0.09 -0.15 10.6 71 2 2 1 3 3 1 0  MSE 85 A DG 2 E DC 4 E DT 5 E DC 109 F DT 111 F DG 16 K DC 17 K DG 18 K 12 1.53 1.53 36.4 -1.85 -0.61 22.2 77 4 6 1 0 2 0 0  DT 8 E DG 9 E DA 10 E DG 104 F DA 112 F DA 113 F DG 114 F DA 115 F 13 2.20 2.20 38.9 -1.49 -0.48 6.4 77 2 0 4 0 3 0 0  MSE 256 A DC 4 E DT 5 E DT 111 F DA 113 F DG 114 F 14 2.54 2.71 40.6 -1.52 -0.65 16.1 89 2 2 3 2 0 0 0  MSE 256 A DT 5 E DC 109 F DT 111 F 15 1.20 1.20 45.3 -1.00 -0.31 19.8 73 4 5 2 4 4 1 0  MSE 85 A DG 16 K DC 17 K DG 18 K 16 1.39 1.51 49.1 -0.57 -0.04 7.2 88 2 1 3 2 1 0 0  MSE 256 A DG 2 E 3DR 3 E DC 4 E DT 5 E DT 111 F 17 1.51 1.51 50.4 -1.36 -0.49 12.3 71 5 1 2 0 4 0 0  MSE 728 A DT 8 E DG 9 E DA 10 E DG 104 F DA 112 F DA 113 F DG 114 F 18 1.40 1.40 50.5 -1.30 -0.68 14.3 92 4 1 4 0 0 1 0  DG 9 E DA 10 E DC 11 E DA 12 E DG 13 E DC 14 E DG 103 F DG 104 F DG 107 F DT 108 F 19 1.23 2.94 55.7 0.27 0.21 15.9 78 6 5 0 6 4 0 0  MSE 659 A MSE 683 A DA 115 F 20 2.31 2.36 59.4 -0.91 -0.15 12.2 80 3 3 5 4 4 2 0   21 1.34 1.34 36.1 -1.30 -0.66 14.7 88 4 0 2 0 0 1 0  DA 10 I DC 11 I DA 12 I DG 13 I DC 14 I DC 15 I DG 103 J DG 107 J DT 108 J Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.