PDBsum entry 2p5o Go to PDB code:  Tunnel analysis for: 2p5o calculated with MOLE 2.0 PDB id 2p5o Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.32 40.4 -1.65 -0.70 19.0 88 6 1 2 0 0 0 0  DA 7 I DT 8 I DG 9 I DA 10 I DC 11 I DG 103 J DA 112 J 2 1.23 1.33 47.5 -1.45 -0.63 16.2 83 5 0 2 0 0 1 0  DA 7 I DT 8 I DG 9 I DA 10 I DC 11 I DA 12 I DG 13 I DC 14 I DC 15 I DG 107 J DT 108 J DC 109 J D A 110 J DT 111 J DA 112 J 3 1.36 1.47 21.0 1.24 0.19 4.9 67 1 1 0 5 2 0 1  MSE 752 A 4 1.29 1.54 19.9 1.36 0.18 3.4 71 1 1 0 5 2 0 1  MSE 752 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.