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PDBsum entry 2ozm

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 2ozm calculated with MOLE 2.0 PDB id
2ozm
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.25 1.25 38.4 -1.63 -0.72 19.2 89 5 2 2 1 0 0 0  DC 2 P DA 12 P DA 7 T DT 8 T DG 9 T DA 10 T DC 11
T
2 1.26 1.26 43.0 -1.70 -0.60 19.8 81 5 1 2 0 1 1 0  DT 6 P DG 7 P DT 8 P DA 12 P DA 7 T DT 8 T DG 9 T
DA 10 T DC 11 T DA 12 T
3 1.26 1.26 48.5 -1.67 -0.49 18.4 76 6 1 2 0 2 2 0  DT 8 P DC 9 P DA 12 P DA 7 T DT 8 T DG 9 T DA 10
T DC 11 T
4 1.35 1.42 15.3 -0.08 -0.03 8.1 72 1 1 1 2 3 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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