PDBsum entry 2onj Go to PDB code:  Tunnel analysis for: 2onj calculated with MOLE 2.0 PDB id 2onj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.53 61.9 0.19 0.21 7.2 81 4 0 7 12 7 0 0   2 1.19 1.53 83.2 -0.88 -0.03 16.9 80 6 3 6 13 5 1 0   3 1.20 1.53 90.0 -0.21 0.17 14.0 78 7 3 6 16 7 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.