 |
PDBsum entry 2iq7
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2iq7 calculated with MOLE 2.0
|
PDB id
|
|
|
|
2iq7
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
30 pores,
coloured by radius |
 |
30 pores,
coloured by radius
|
30 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.24 |
2.28 |
32.8 |
-1.58 |
-0.58 |
16.2 |
94 |
 |
5 |
2 |
5 |
1 |
0 |
0 |
0 |
 |
|
 |
 |
2 |
 |
2.83 |
3.38 |
36.8 |
-1.10 |
-0.28 |
7.9 |
99 |
2 |
1 |
8 |
3 |
1 |
0 |
0 |
|
 |
3 |
 |
3.18 |
3.33 |
39.0 |
-1.42 |
-0.81 |
11.8 |
95 |
3 |
3 |
6 |
0 |
0 |
0 |
0 |
PG4 3005 F
|
 |
4 |
 |
2.82 |
3.42 |
39.8 |
-1.71 |
-0.50 |
12.7 |
96 |
3 |
2 |
9 |
2 |
1 |
0 |
0 |
|
 |
5 |
 |
2.20 |
2.20 |
44.4 |
-0.59 |
-0.44 |
11.6 |
90 |
2 |
3 |
4 |
3 |
1 |
2 |
0 |
|
 |
6 |
 |
1.43 |
1.92 |
48.3 |
-1.62 |
-0.51 |
9.4 |
93 |
2 |
2 |
9 |
2 |
2 |
1 |
0 |
NAG 2 I
|
 |
7 |
 |
1.48 |
1.92 |
48.5 |
-0.95 |
-0.38 |
9.9 |
91 |
3 |
6 |
11 |
5 |
1 |
1 |
0 |
|
 |
8 |
 |
4.48 |
4.48 |
50.8 |
-1.78 |
-0.55 |
11.7 |
94 |
4 |
1 |
13 |
2 |
2 |
0 |
0 |
NAG 1 N NAG 2 N
|
 |
9 |
 |
3.02 |
3.15 |
53.6 |
-2.39 |
-0.52 |
21.3 |
92 |
8 |
4 |
10 |
2 |
1 |
1 |
0 |
|
 |
10 |
 |
1.79 |
1.83 |
54.0 |
-1.97 |
-0.69 |
14.7 |
96 |
6 |
1 |
10 |
0 |
1 |
0 |
0 |
PG4 3005 F NAG 1 N
|
 |
11 |
 |
3.37 |
3.73 |
57.2 |
-1.23 |
-0.42 |
8.1 |
95 |
3 |
4 |
13 |
4 |
1 |
0 |
0 |
NAG 1 I NAG 2 I
|
 |
12 |
 |
2.25 |
2.28 |
58.7 |
-1.43 |
-0.52 |
16.4 |
91 |
7 |
2 |
7 |
4 |
1 |
1 |
0 |
|
 |
13 |
 |
1.82 |
3.97 |
62.4 |
-1.81 |
-0.48 |
18.2 |
87 |
6 |
3 |
7 |
3 |
3 |
0 |
0 |
NAG 2 H
|
 |
14 |
 |
2.25 |
2.25 |
63.3 |
-1.86 |
-0.46 |
10.0 |
94 |
3 |
1 |
9 |
0 |
3 |
0 |
0 |
PG4 3001 E NAG 1 H NAG 2 H MAN 3 H MAN 4 H MAN 5 H
|
 |
15 |
 |
2.22 |
2.22 |
70.0 |
-1.56 |
-0.54 |
16.8 |
89 |
6 |
3 |
8 |
3 |
2 |
2 |
0 |
PG4 3005 F
|
 |
16 |
 |
1.79 |
1.84 |
70.9 |
-2.11 |
-0.72 |
19.0 |
93 |
8 |
3 |
13 |
2 |
0 |
0 |
0 |
PG4 3005 F
|
 |
17 |
 |
3.26 |
5.25 |
71.1 |
-1.71 |
-0.65 |
14.0 |
93 |
7 |
2 |
10 |
2 |
2 |
2 |
0 |
NAG 1 N NAG 2 N
|
 |
18 |
 |
2.23 |
2.24 |
79.3 |
-2.26 |
-0.55 |
20.6 |
89 |
12 |
5 |
13 |
2 |
2 |
1 |
0 |
PG4 3005 F
|
 |
19 |
 |
3.11 |
3.20 |
80.4 |
-2.30 |
-0.62 |
18.5 |
92 |
13 |
4 |
14 |
1 |
2 |
1 |
0 |
NAG 1 N
|
 |
20 |
 |
1.81 |
4.24 |
79.7 |
-1.76 |
-0.68 |
13.6 |
97 |
5 |
4 |
17 |
4 |
0 |
0 |
0 |
NAG 2 H MAN 3 H MAN 4 H MAN 5 H MAN 6 H
|
 |
21 |
 |
2.23 |
2.24 |
84.4 |
-1.66 |
-0.55 |
17.5 |
89 |
11 |
3 |
10 |
4 |
2 |
1 |
0 |
PG4 3005 F
|
 |
22 |
 |
3.12 |
3.12 |
100.2 |
-1.67 |
-0.51 |
14.3 |
91 |
7 |
2 |
9 |
1 |
2 |
1 |
0 |
NAG 1 I NAG 2 I
|
 |
23 |
 |
3.24 |
3.35 |
101.7 |
-1.84 |
-0.65 |
13.9 |
96 |
10 |
4 |
19 |
0 |
2 |
0 |
0 |
PG4 3001 E NAG 1 H NAG 2 H
|
 |
24 |
 |
3.40 |
3.48 |
101.3 |
-1.66 |
-0.37 |
13.5 |
91 |
5 |
2 |
10 |
3 |
3 |
1 |
0 |
NAG 1 I NAG 2 I
|
 |
25 |
 |
2.40 |
3.41 |
101.5 |
-1.83 |
-0.46 |
16.7 |
88 |
5 |
2 |
8 |
1 |
3 |
1 |
0 |
NAG 1 I NAG 2 I
|
 |
26 |
 |
3.00 |
3.00 |
104.4 |
-1.90 |
-0.48 |
15.8 |
90 |
7 |
3 |
11 |
2 |
3 |
1 |
0 |
NAG 1 I NAG 2 I
|
 |
27 |
 |
2.26 |
2.25 |
109.6 |
-1.66 |
-0.82 |
9.8 |
102 |
3 |
3 |
14 |
0 |
0 |
0 |
0 |
NAG 2 H MAN 3 H MAN 4 H MAN 6 H
|
 |
28 |
 |
2.26 |
2.26 |
116.0 |
-2.08 |
-0.71 |
15.6 |
98 |
10 |
4 |
24 |
0 |
0 |
0 |
0 |
PG4 3005 F NAG 2 H MAN 3 H MAN 4 H MAN 6 H
|
 |
29 |
 |
2.25 |
2.26 |
116.6 |
-1.72 |
-0.58 |
12.6 |
93 |
8 |
3 |
13 |
2 |
3 |
2 |
0 |
PG4 3001 E NAG 1 H NAG 2 H MAN 3 H MAN 4 H MAN 5 H NAG 1 N
|
 |
30 |
 |
2.75 |
4.34 |
142.9 |
-1.64 |
-0.75 |
14.2 |
98 |
10 |
6 |
18 |
0 |
0 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |