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PDBsum entry 2f8x

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 2f8x calculated with MOLE 2.0 PDB id
2f8x
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.62 2.53 25.6 -0.51 -0.24 7.2 79 1 2 0 3 3 2 0  
2 1.44 1.68 70.0 -1.90 -0.19 30.1 80 12 6 3 8 1 1 0  DA 16 X DT 106 Y
3 1.43 1.68 75.4 -1.31 -0.37 22.8 86 9 7 4 6 0 0 0  DA 16 X DT 106 Y
4 1.50 1.66 87.6 -1.39 -0.26 19.8 85 12 7 4 7 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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