PDBsum entry 2dyp Go to PDB code:  Tunnel analysis for: 2dyp calculated with MOLE 2.0 PDB id 2dyp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 2.11 21.7 -2.23 -0.38 20.8 75 2 2 3 1 2 1 0   2 1.39 2.12 39.7 -2.16 -0.44 28.0 80 6 7 3 3 2 1 0   3 1.40 2.12 44.0 -2.03 -0.40 26.1 84 6 4 4 4 2 1 0   4 1.40 2.11 45.7 -1.18 -0.37 18.5 84 4 4 4 4 2 1 0   5 1.16 1.50 65.8 -0.60 -0.09 16.5 79 7 7 3 7 5 1 0   6 1.12 1.28 17.9 1.36 0.57 6.0 70 2 0 0 4 2 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.