PDBsum entry 2dyl Go to PDB code:  Tunnel analysis for: 2dyl calculated with MOLE 2.0 PDB id 2dyl Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.83 15.2 2.40 0.88 9.8 86 1 1 0 8 0 0 0   2 1.45 2.84 21.2 0.62 0.26 15.0 81 2 2 0 8 0 0 1   3 1.25 2.61 23.0 1.80 0.75 7.3 78 2 0 0 5 4 0 0   4 1.28 2.51 26.5 1.68 0.74 8.9 78 2 1 0 5 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.