PDBsum entry 2dtu Go to PDB code:  Pore analysis for: 2dtu calculated with MOLE 2.0 PDB id 2dtu Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   50 pores, coloured by radius 51 pores, coloured by radius 51 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.43 5.19 26.3 -3.21 -0.79 42.0 85 5 7 3 1 0 0 0   2 3.57 4.37 35.1 -1.32 -0.53 23.3 81 3 5 1 2 0 1 0  DG 9 G DC 102 H DG 103 H DG 104 H 3 1.94 1.94 46.3 -0.82 -0.31 16.2 79 5 2 2 1 1 2 0  DA 10 G DC 11 G DA 12 G DG 13 G DC 14 G DC 15 G DC 102 H DG 103 H DG 107 H DT 108 H 4 1.38 1.85 50.2 -1.05 -0.17 19.9 80 4 5 4 7 4 0 0  DG 2 G 3DR 3 G 5 1.28 1.28 50.0 -0.84 -0.57 13.0 92 2 3 5 4 0 1 0  DG 2 I 3DR 3 I DC 4 I DT 111 J DA 115 J 6 1.19 1.83 51.2 -0.12 -0.17 11.3 85 2 3 5 4 2 3 0  DG 2 G 3DR 3 G 7 1.29 1.29 55.3 -1.26 -0.59 17.6 85 4 5 3 2 1 1 0  DG 2 I 3DR 3 I DC 4 I DA 113 J DG 114 J DA 115 J 8 3.46 3.46 59.3 -1.28 -0.58 18.5 88 4 8 5 2 1 0 0  DG 2 I 3DR 3 I DC 4 I DT 111 J DA 112 J DA 113 J DG 114 J DA 115 J 9 1.21 1.89 71.6 -0.16 0.03 14.3 81 4 6 4 9 4 3 0   10 1.20 1.90 72.4 -0.02 0.00 12.7 84 3 6 5 10 5 2 0   11 2.37 3.11 79.9 -1.20 -0.25 22.7 84 8 7 3 5 2 0 0  DG 114 J DA 115 J 12 1.50 1.49 92.5 -1.37 -0.52 16.6 82 7 4 5 1 3 1 0  DG 2 G 3DR 3 G DC 4 G DT 8 G DG 9 G DA 10 G DC 11 G DA 12 G DG 13 G DC 14 G DG 107 H DT 108 H DC 109 H DA 110 H DT 111 H DA 112 H DA 113 H DG 114 H DA 115 H 13 1.40 1.85 91.6 -1.84 -0.30 28.9 78 12 10 3 9 4 0 0   14 1.75 2.07 92.8 -1.74 -0.38 24.0 76 10 4 4 2 4 0 1  DG 2 G 3DR 3 G DC 4 G DT 111 H DG 114 H DA 115 H 15 1.70 2.13 101.6 -1.87 -0.35 24.6 76 12 5 4 3 6 0 0  DG 2 G 3DR 3 G DC 4 G DT 111 H DG 114 H DA 115 H 16 1.94 2.04 103.6 -0.73 -0.10 14.0 83 6 3 7 4 4 0 0  DG 2 G 3DR 3 G DC 4 G DT 111 H DG 114 H DA 115 H 17 1.28 1.29 107.9 -0.60 -0.18 15.1 84 7 3 4 7 2 1 0  DG 2 I 3DR 3 I DC 4 I DA 113 J DG 114 J DA 115 J 18 2.39 2.84 111.9 -0.82 -0.29 16.4 87 7 6 6 7 2 0 0  DG 2 I 3DR 3 I DC 4 I DT 111 J DA 112 J DA 113 J DG 114 J 19 2.66 2.86 114.3 -1.55 -0.31 23.6 78 13 8 7 6 6 0 0  DG 2 G 3DR 3 G DC 4 G DT 111 H DG 114 H DA 115 H 20 1.25 1.87 118.4 -1.43 -0.30 22.7 78 10 11 5 8 5 3 0   21 1.81 2.03 122.2 -1.48 -0.23 22.9 79 13 7 5 5 5 0 1   22 1.48 1.48 124.9 -1.78 -0.49 23.6 79 14 8 5 3 4 1 1  DT 8 G DG 9 G DA 10 G DC 11 G DA 12 G DG 13 G DC 14 G DC 15 G DG 107 H DT 108 H DC 109 H DA 110 H DT 111 H DA 112 H DA 113 H DG 114 H 23 1.51 1.51 136.0 -1.32 -0.35 18.9 83 10 8 6 5 4 1 0  DT 8 G DG 9 G DA 10 G DC 11 G DA 12 G DG 13 G DC 14 G DG 107 H DT 108 H DC 109 H DA 110 H DT 111 H DA 112 H DA 113 H DG 114 H 24 1.49 1.75 139.4 -1.41 -0.37 19.8 80 15 8 7 7 6 1 0  DT 8 G DG 9 G DA 10 G DC 11 G DA 12 G DG 13 G DC 14 G DG 107 H DT 108 H DC 109 H DA 110 H DT 111 H DA 112 H DA 113 H DG 114 H 25 1.51 1.88 136.5 -1.48 -0.23 23.3 77 18 7 6 9 7 0 1  DG 114 H 26 1.55 1.87 147.6 -1.09 -0.13 18.4 81 14 7 8 11 7 0 0  DG 114 H 27 1.36 1.39 154.6 -1.34 -0.20 21.5 80 19 9 8 11 9 0 0  DG 114 H 28 1.85 2.08 152.5 -1.79 -0.30 27.0 76 21 12 7 8 7 0 1  DG 114 H 29 2.02 2.01 154.4 -1.44 -0.20 23.3 79 17 12 8 10 7 0 0  DG 114 H 30 1.97 1.97 31.4 -0.79 -0.50 9.8 83 2 0 1 2 0 1 0  DG 2 K 3DR 3 K DC 4 K DT 5 K DA 112 L DA 115 L 31 1.80 2.18 40.2 -0.61 0.09 21.7 79 7 1 1 4 1 0 0  DG 2 K DC 4 K DA 112 L DA 115 L 32 1.82 2.18 51.4 0.06 0.14 12.7 76 5 1 2 4 2 0 0  DG 2 K DC 4 K DA 112 L DA 115 L 33 1.16 1.25 57.9 -0.54 -0.10 13.7 81 6 1 5 7 2 1 0  DG 2 K 3DR 3 K DC 4 K DT 5 K DA 115 L 34 1.16 1.22 59.5 -1.64 -0.53 23.2 82 7 5 2 4 1 1 0  DT 8 K DG 9 K DA 112 L DA 113 L DG 114 L 35 1.18 1.22 66.7 -1.01 -0.40 13.6 76 3 2 2 4 4 1 0  DC 4 K DT 5 K DT 6 K DA 7 K DT 8 K DG 9 K DA 112 L DA 113 L DG 114 L DA 115 L 36 1.98 1.98 70.0 -0.25 -0.05 10.2 82 5 2 5 7 3 1 0  DG 2 K 3DR 3 K DC 4 K DT 5 K DA 115 L 37 1.13 1.69 90.1 -0.80 -0.32 15.4 86 4 6 6 6 2 1 0  DC 1 K DG 2 K 38 1.18 1.64 137.1 -1.12 -0.11 19.9 79 10 5 9 7 5 0 0  DG 114 L 39 3.17 3.17 29.4 -0.03 -0.17 10.3 91 0 2 6 3 2 0 0   40 1.84 1.84 30.8 -1.65 -0.55 14.7 79 2 2 1 0 1 0 0  DG 101 L DC 102 L 41 1.77 3.38 31.5 -1.34 -0.24 16.3 88 6 2 2 4 1 0 0  DG 114 F 42 2.49 2.49 32.4 -0.39 -0.09 13.4 90 1 2 3 2 1 0 0  DG 2 E 3DR 3 E DC 4 E DA 113 F DG 114 F DA 115 F 43 3.65 3.79 33.0 -0.79 -0.26 11.7 88 1 3 5 3 3 0 0   44 2.12 2.33 44.0 -1.79 -0.67 20.0 76 4 3 2 1 1 0 0  DC 17 K DG 18 K DC 102 L DG 103 L 45 3.00 3.16 44.9 -0.66 -0.24 10.1 84 0 4 5 4 3 3 0   46 1.75 3.38 47.8 -1.15 -0.25 16.8 85 5 2 2 5 2 0 0  DG 114 F DC 102 L 47 1.31 1.38 52.5 -0.95 -0.16 19.9 83 5 3 3 2 2 0 0  DC 1 E DG 2 E 48 2.86 4.64 60.9 -1.77 -0.45 17.3 74 4 5 3 2 3 3 0  DA 113 F DG 114 F 49 1.44 1.59 65.9 -1.35 -0.63 15.3 86 5 6 5 1 2 1 0  DA 7 E DT 8 E DG 9 E DA 10 E DC 102 F DG 103 F DG 104 F DA 110 F DT 111 F DA 112 F DA 113 F DG 114 F 50 1.68 1.95 25.7 0.75 0.32 13.5 86 2 2 0 6 1 0 0  DC 14 I DT 106 J DG 107 J 51 1.39 1.59 41.3 -1.02 -0.66 10.4 87 3 1 3 0 1 2 0  DG 9 I DA 10 I DC 11 I DA 12 I DG 13 I DC 14 I DG 104 J DT 106 J DG 107 J DT 108 J Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.