PDBsum entry 2dpy Go to PDB code:  Tunnel analysis for: 2dpy calculated with MOLE 2.0 PDB id 2dpy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 1.34 21.3 0.58 0.11 9.1 81 4 1 2 7 0 1 0   2 1.13 1.39 22.2 0.21 0.21 12.7 79 3 1 1 7 1 1 0   3 1.15 1.41 20.6 0.17 0.27 11.2 81 2 1 0 7 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.