PDBsum entry 2d3w Go to PDB code:  Tunnel analysis for: 2d3w calculated with MOLE 2.0 PDB id 2d3w Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.44 20.8 1.89 0.51 1.9 86 0 1 0 7 1 1 0   2 1.15 1.42 25.5 1.95 0.61 3.9 84 0 2 0 9 1 1 0   3 1.11 1.45 34.9 1.83 0.50 5.7 87 0 3 1 10 0 1 0   4 1.23 1.98 15.9 0.49 -0.03 2.4 88 0 0 1 3 1 0 0   5 1.24 1.97 16.4 1.15 0.27 10.2 72 1 1 0 8 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.