PDBsum entry 2d3c Go to PDB code:  Tunnel analysis for: 2d3c calculated with MOLE 2.0 PDB id 2d3c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.43 1.71 43.4 -2.23 -0.32 27.2 79 9 6 5 3 4 1 0  MN 1071 H P3P 5010 H ADP 6010 H 2 1.44 1.54 54.0 -2.22 -0.41 27.7 82 9 6 5 4 3 0 0  MN 1071 H P3P 5010 H ADP 6010 H 3 1.40 1.72 45.0 -2.19 -0.34 26.6 78 9 6 4 3 4 1 0  MN 1001 A P3P 5001 A ADP 6001 A 4 1.38 1.50 54.9 -2.25 -0.41 28.3 82 9 6 5 4 3 0 0  MN 1001 A P3P 5001 A ADP 6001 A 5 1.39 1.62 38.4 -2.16 -0.36 27.0 81 9 5 5 3 3 1 0  MN 1021 C P3P 5003 C ADP 6003 C 6 1.39 1.67 38.8 -2.17 -0.34 26.4 81 9 5 5 3 3 1 0  MN 1031 D P3P 5004 D ADP 6005 D 7 1.38 1.68 38.9 -2.18 -0.34 27.1 81 9 5 4 3 3 1 0  MN 1061 G P3P 5006 G ADP 6006 G 8 1.41 1.60 43.9 -2.12 -0.35 25.7 79 9 6 5 3 4 1 0  MN 1041 E P3P 5005 E ADP 6004 E 9 1.39 1.67 20.5 -0.37 -0.25 13.7 65 1 2 0 1 2 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.