PDBsum entry 2cdc

Pore analysis for: 2cdc calculated with

MOLE 2.0

PDB id

2cdc

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

5 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.58

2.76

25.4

-2.61

-0.44

28.5

75

5

3

1

0

2

1

0

XYS 1370 A

2

2.56

2.69

26.0

-2.58

-0.53

29.6

79

5

2

2

0

1

1

0

XYS 1370 A

3

1.25

1.24

51.8

0.55

0.31

12.5

78

4

2

0

6

2

2

1

NAP 1367 A XYS 1368 A

4

1.58

1.72

59.9

-2.02

-0.39

17.0

77

10

3

5

2

4

1

0

XYS 1370 A EDO 1367 B XYS 1370 B

5

1.56

1.65

61.4

-2.14

-0.38

20.8

76

10

3

5

2

3

2

1

XYS 1370 C EDO 1367 D XYS 1371 D

6

1.56

1.71

91.3

-1.66

-0.45

19.7

71

13

6

5

5

4

2

0

EDO 1367 B XYS 1370 B EDO 1367 D XYS 1371 D

7

2.58

2.69

96.8

-1.03

-0.10

23.2

75

13

5

1

4

2

2

3

EDO 1367 D XYS 1371 D

8

1.57

1.67

100.2

-1.75

-0.48

22.7

74

11

10

6

6

3

1

1

XYS 1370 A XYS 1370 C

9

1.16

1.36

111.6

-0.06

0.07

19.0

83

11

7

0

18

1

1

1

NAP 1368 C XYP 1369 C

10

1.90

1.90

26.2

-2.16

-0.51

26.4

91

4

1

1

1

0

0

0

NAP 1368 B

11

1.11

3.26

35.4

2.07

0.87

11.0

77

3

2

0

12

0

0

0

12

1.34

1.58

41.7

-0.08

-0.12

13.6

82

5

5

1

6

2

1

1

NAP 1368 D XYS 1369 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.