PDBsum entry 2byv

Pore analysis for: 2byv calculated with

MOLE 2.0

PDB id

2byv

Pores calculated on whole structure

Pores calculated excluding ligands

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14 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.82

2.92

26.5

-2.38

-0.42

32.8

86

7

4

2

3

0

0

0

2

1.31

1.62

33.8

-1.25

-0.39

18.8

75

4

3

1

2

2

1

1

3

2.65

3.77

39.8

-1.13

-0.35

17.2

88

6

3

6

2

1

1

0

4

1.62

1.86

45.6

-1.11

-0.38

15.6

85

5

2

6

5

1

1

1

5

2.66

3.76

54.3

-1.90

-0.44

26.6

87

11

6

6

3

1

0

0

6

2.82

2.92

58.0

-1.63

-0.29

23.1

86

10

5

6

5

2

0

0

7

1.88

2.05

72.1

-1.24

-0.34

19.5

83

7

5

5

6

0

1

0

8

1.89

2.03

74.7

-1.14

-0.32

17.3

87

7

5

7

6

1

1

0

9

1.87

1.99

79.0

-1.66

-0.38

23.1

87

10

8

7

7

0

1

0

10

1.04

1.04

27.6

2.90

0.91

3.9

84

2

0

0

11

1

0

0

11

1.13

1.31

28.1

2.85

0.85

3.1

88

2

0

0

12

0

0

0

12

1.28

2.30

31.3

3.63

1.18

0.3

92

0

0

0

14

2

0

0

13

1.03

1.04

35.7

2.94

0.93

2.6

84

2

0

0

12

2

0

0

14

1.31

2.31

78.9

-0.93

-0.06

15.3

81

4

4

5

7

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.