PDBsum entry 2bdw Go to PDB code:  Pore analysis for: 2bdw calculated with MOLE 2.0 PDB id 2bdw Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.96 3.03 27.1 -1.61 0.03 21.9 71 5 1 1 3 3 2 0   2 2.06 2.16 29.2 0.26 0.28 10.6 79 2 0 2 6 1 1 0   3 2.79 3.25 39.3 -1.49 -0.36 21.0 82 5 2 3 4 0 1 0   4 1.92 3.13 50.0 -1.59 -0.41 21.0 73 7 5 0 2 3 1 0   5 3.56 3.81 51.9 -0.76 -0.41 14.9 78 4 6 2 6 1 1 0   6 1.83 1.94 55.6 -1.24 -0.39 20.5 83 8 4 3 6 0 0 0   7 1.95 3.02 60.3 -1.69 -0.28 21.6 76 9 2 2 4 3 1 0   8 1.55 1.70 61.3 -1.49 -0.40 17.8 85 8 1 4 6 0 0 0   9 2.80 3.24 64.7 -0.86 -0.28 16.1 80 6 4 4 6 2 1 0   10 2.78 3.25 69.1 -1.42 -0.21 21.7 84 10 1 4 6 2 0 0   11 1.95 3.01 71.2 -1.18 -0.33 19.0 75 9 5 2 4 3 2 0   12 3.55 3.80 72.9 -0.60 -0.32 15.1 78 6 6 4 7 1 2 0   13 3.55 3.82 79.3 -0.89 -0.19 18.6 81 8 4 4 8 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.