PDBsum entry 2ayl

Pore analysis for: 2ayl calculated with

MOLE 2.0

PDB id

2ayl

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

12 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.31

1.30

28.1

-0.37

-0.31

10.7

77

1

3

5

2

4

2

1

2

1.24

1.24

33.0

1.08

0.50

10.5

83

4

0

3

10

1

1

0

BOG 751 A FLP 1701 A

3

1.24

1.25

33.0

-1.10

-0.41

12.7

79

3

3

5

4

3

2

2

4

1.29

1.29

36.6

0.47

0.22

9.0

84

4

0

6

10

3

1

0

BOG 1751 B FLP 2701 B

5

1.68

1.68

42.1

-1.33

-0.41

13.1

72

5

2

3

1

2

3

2

6

1.65

1.65

43.2

-1.95

-0.57

8.1

76

4

0

7

3

4

2

0

7

1.41

2.14

47.7

-0.50

-0.18

12.9

81

2

4

10

6

3

1

0

NAG 1 D NAG 1 G

8

1.77

2.09

49.0

-1.43

-0.30

12.8

70

6

2

6

4

4

4

5

9

1.65

1.98

53.8

-1.32

-0.30

11.8

74

5

2

6

3

2

3

2

10

1.24

1.24

54.5

-0.68

-0.08

12.5

79

5

2

8

7

6

1

0

11

1.22

1.23

67.3

0.68

0.11

4.6

81

2

1

10

13

6

1

0

FLP 1701 A NAG 1 G NAG 2 G MAN 3 G

12

1.26

1.24

68.4

0.15

-0.06

6.0

81

5

0

13

15

7

6

0

FLP 2701 B

13

1.65

1.65

71.0

-1.68

-0.52

11.3

73

7

2

15

5

7

6

5

14

1.18

1.23

76.1

0.65

0.19

6.2

80

4

2

9

16

7

1

0

BOG 751 A FLP 1701 A NAG 1 G

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.