 |
PDBsum entry 2ayl
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2ayl calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2ayl
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
16 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.18 |
1.20 |
81.4 |
0.98 |
0.24 |
3.5 |
77 |
|
3 |
2 |
11 |
25 |
7 |
7 |
2 |
|
FLP 2701 B NAG 1 D NAG 2 D
|
 |
|
2 |
 |
1.20 |
1.20 |
128.3 |
-0.29 |
0.00 |
10.5 |
77 |
11 |
2 |
11 |
16 |
5 |
6 |
1 |
BOG 751 A FLP 1701 A
|
|
3 |
 |
1.20 |
2.96 |
128.5 |
0.13 |
0.11 |
8.7 |
77 |
7 |
4 |
14 |
20 |
9 |
4 |
2 |
BOG 751 A FLP 1701 A
|
|
4 |
 |
1.30 |
3.11 |
129.6 |
-0.24 |
0.00 |
8.8 |
73 |
10 |
2 |
14 |
17 |
6 |
7 |
6 |
BOG 751 A FLP 1701 A
|
|
5 |
 |
1.14 |
1.44 |
19.6 |
-0.43 |
-0.17 |
13.1 |
74 |
0 |
4 |
1 |
4 |
1 |
4 |
0 |
MNH 1601 B
|
|
6 |
 |
1.16 |
1.45 |
19.9 |
-0.31 |
-0.14 |
12.8 |
74 |
0 |
4 |
1 |
4 |
1 |
4 |
0 |
MNH 1601 B
|
 |
7 |
 |
1.04 |
1.29 |
19.7 |
-0.19 |
-0.06 |
10.7 |
80 |
3 |
0 |
1 |
4 |
0 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program