PDBsum entry 2awr

Structural protein/DNA

PDB id: 2awr

Contents

Protein chains

51 a.a.

57 a.a.

DNA/RNA

Theoretical model

PDB id:

2awr

Name:

Structural protein/DNA

Title:

Protamine-DNA complex 1

Structure:

Sperm protamine p1. Chain: a. Synonym: cysteine-rich protamine. Sperm protamine p2. Chain: b. Synonym: histone p2, hp2, protamine p3, hp3, protamine p4, hp4, basic nuclear protein hps1, basic nuclear protein hps2, hpi1, hpi2. 30-mer.

Source:

Homo sapiens. Human. Synthetic: yes. Synthetic: yes

Authors:

K.Biegeleisen

Key ref:

K.Biegeleisen (2006). The probable structure of the protamine-Dna complex.. J theor biol, 241, 533.

Date:

02-Sep-05 Release date: 27-Sep-05

Protein chain

P04553  (HSP1_HUMAN) -  Sperm protamine P1

Seq: 51 a.a.

Struc: 51 a.a.

Protein chain

P04554  (PRM2_HUMAN) -  Protamine-2

Seq: 102 a.a.

Struc: 57 a.a.*

* PDB and UniProt seqs differ at 1 residue position (black cross)

DNA/RNA chains

G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T 30 bases

A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C 30 bases

G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G 29 bases

C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C 29 bases

G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G 29 bases

C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C-G-T-A-C 29 bases