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PDBsum entry 2asd
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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2asd calculated with MOLE 2.0 PDB id
2asd
Pores calculated on whole structure Pores calculated excluding ligands
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9 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.75 3.75 26.6 -1.68 -0.66 15.3 81 2 1 2 0 0 1 0  DA 903 E DG 1801 H DG 1802 H DT 1803 H DT 1804 H
DG 1805 H DC 1918 J DC 1919 J
2 2.74 3.06 27.3 -0.68 -0.21 11.0 83 3 0 1 2 1 0 0  DCP 414 A DA 812 D DDG 813 D DA 904 E DC 905 E 8
OG 906 E DC 907 E DT 908 E DA 909 E
3 2.78 2.78 30.0 -1.41 -0.49 16.8 78 6 1 1 1 2 0 0  DA 812 D DT 908 E DA 909 E DC 910 E DC 911 E DA
912 E
4 2.77 2.92 32.5 -1.15 -0.34 18.1 87 7 1 3 5 0 0 0  DCP 1414 B DA 1812 H DDG 1813 H DT 1908 J DA 1909
J
5 1.18 1.18 33.3 -1.08 -0.33 17.3 92 3 0 2 4 0 0 0  DT 811 D DA 904 E DC 905 E 8OG 906 E DC 907 E
6 2.74 3.00 37.2 -1.58 -0.35 25.6 79 6 4 0 2 1 2 0  DCP 414 A DA 812 D DDG 813 D DT 908 E DA 909 E DT
1804 H DG 1805 H
7 2.05 2.38 40.5 -0.02 0.28 19.0 89 6 0 2 6 0 0 0  DT 804 D DG 805 D DT 808 D DT 811 D DA 904 E DC
905 E DC 907 E DT 908 E DA 909 E DC 910 E DC 911
E DA 912 E
8 1.19 1.17 46.4 -0.95 -0.28 15.8 88 5 0 3 5 1 0 0  DCP 414 A DA 812 D DDG 813 D DA 904 E DC 905 E 8
OG 906 E DC 907 E DT 908 E DA 909 E
9 2.41 2.42 47.3 -2.08 -0.58 26.4 77 7 6 1 1 2 2 0  DCP 414 A DT 804 D DA 812 D DDG 813 D DC 911 E DA
912 E DT 1804 H DG 1805 H
10 2.04 2.10 49.8 -0.67 -0.10 17.2 90 5 2 3 6 0 1 0  DT 1804 H DG 1805 H DT 1808 H DG 1809 H DG 1810 H
DT 1811 H DA 1812 H DC 1910 J DC 1911 J DA 1912 J
11 1.18 1.19 51.1 -0.50 0.06 21.3 92 6 0 2 7 0 0 0  DT 804 D DG 805 D DT 808 D DA 904 E DC 905 E 8OG
906 E DC 907 E DT 908 E DA 909 E DC 910 E DC 911
E DA 912 E
12 2.79 2.90 54.8 -1.95 -0.57 19.6 77 8 2 3 3 3 1 0  DT 1804 H DG 1805 H DA 1812 H DT 1908 J DA 1909 J
DC 1910 J DC 1911 J DA 1912 J
13 3.00 3.45 61.8 -1.43 -0.47 19.4 77 5 3 1 3 1 3 0  DG 1801 H DG 1802 H DT 1803 H DT 1804 H DG 1805 H
DC 1919 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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