PDBsum entry 2ak4 Go to PDB code:  Pore analysis for: 2ak4 calculated with MOLE 2.0 PDB id 2ak4 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   26 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.65 3.29 28.0 -3.20 -0.75 41.5 83 5 4 1 0 0 0 0   2 2.07 2.07 29.1 -2.88 -0.66 26.2 78 5 2 3 0 0 1 0   3 2.23 2.44 29.3 -2.19 -0.86 15.8 86 2 2 3 1 0 0 0   4 3.75 5.04 34.2 -1.48 -0.57 13.9 83 2 4 5 2 1 2 0   5 2.52 5.14 40.5 -3.09 -0.49 34.4 82 5 3 3 1 2 1 0   6 2.82 2.89 40.6 -2.14 -0.63 24.5 82 3 4 4 2 1 2 0   7 2.24 2.45 41.6 -1.62 -0.58 16.1 80 3 3 3 5 0 2 0   8 2.57 2.95 51.5 -1.92 -0.63 20.1 82 5 5 5 2 2 2 0   9 1.77 1.93 54.2 -1.29 -0.51 12.5 85 3 2 6 3 2 2 0   10 2.53 4.78 57.2 -1.62 -0.51 22.3 82 4 6 4 2 1 3 0   11 2.60 2.96 63.2 -2.36 -0.63 27.2 80 6 8 4 1 2 2 0   12 2.11 2.14 64.0 -1.25 -0.53 14.4 86 8 4 7 5 1 3 0   13 2.56 2.84 74.5 -1.88 -0.57 25.2 81 7 7 4 2 2 3 0   14 1.77 1.93 82.3 -1.44 -0.61 15.1 86 7 4 11 5 1 3 0   15 1.76 1.93 83.5 -1.33 -0.56 14.6 82 6 7 7 4 2 1 0   16 2.51 5.09 105.7 -2.57 -0.70 25.7 85 9 8 5 1 2 1 0   17 1.77 1.93 111.2 -2.12 -0.56 21.2 81 11 7 7 2 2 4 0  IOD 1009 K 18 1.83 1.85 124.2 -1.82 -0.50 20.2 81 14 9 9 5 2 7 0  IOD 1009 K 19 2.01 2.21 143.3 -2.20 -0.65 20.3 85 11 9 11 2 3 1 0   20 1.96 2.02 159.5 -1.87 -0.57 19.2 84 16 12 13 5 3 3 0   21 2.66 2.68 30.3 -1.78 -0.64 13.7 86 4 2 4 0 1 0 0   22 2.70 4.51 39.0 -1.16 -0.46 11.2 84 4 1 4 4 0 3 0   23 1.49 1.65 54.4 -1.43 -0.44 19.3 80 4 3 3 2 1 2 0   24 1.27 1.31 59.1 -1.15 -0.41 15.4 85 4 4 4 3 0 2 0   25 2.36 2.43 27.6 -0.68 -0.14 13.7 85 3 2 3 3 0 2 1   26 2.03 2.03 26.7 -2.36 -0.67 28.2 83 4 5 3 0 1 1 0   27 2.20 2.83 36.6 -2.19 -0.39 25.2 82 5 3 6 1 4 1 0   28 2.01 2.02 43.3 -1.83 -0.48 19.9 79 5 4 5 1 5 2 0   29 2.18 2.80 44.0 -1.24 -0.22 14.1 78 4 4 4 3 4 1 0   30 1.99 1.99 49.7 -1.87 -0.67 26.0 84 5 6 4 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.