PDBsum entry 2agp Go to PDB code:  Tunnel analysis for: 2agp calculated with MOLE 2.0 PDB id 2agp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.05 2.05 16.8 0.99 0.57 16.0 94 2 0 0 4 0 0 0  DA 1810 C DT 1811 C DT 1904 D DT 1905 D DG 1906 D DA 1907 D 2 1.39 1.39 26.8 -0.47 -0.04 19.0 99 2 0 1 2 0 0 0  DA 1806 C DA 1807 C DG 1808 C DG 1809 C DA 1908 D DT 1909 D 3 2.27 2.40 27.3 -1.13 -0.16 24.0 94 4 0 2 2 0 0 0  DG 1805 C DA 1807 C DG 1808 C DG 1809 C DA 1908 D DT 1909 D DC 1910 D DC 1911 D 4 1.30 2.11 17.6 -0.10 -0.02 22.1 83 2 1 0 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.