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PDBsum entry 2a07

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 2a07 calculated with MOLE 2.0 PDB id
2a07
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.47 1.72 69.3 -2.09 -0.69 20.9 82 9 3 2 1 1 2 0  DT 16 A DT 17 A DT 18 A DC 19 A DT 10 B DT 11 B
2 1.70 1.87 70.7 -0.84 -0.17 11.2 85 4 0 2 4 2 2 0  DG 7 A DA 8 A DA 9 A DA 18 B DT 19 B DA 20 B DG
21 B DC 11 C DA 12 C DA 13 C DA 14 C DT 15 C DA 6
D
3 2.16 2.26 72.6 -2.45 -0.51 33.8 77 7 6 0 2 1 0 0  DG 7 A DT 17 A DT 18 A DC 19 A DT 10 B MG 601 F
4 1.42 1.42 100.4 -1.55 -0.45 23.1 85 9 4 2 5 0 0 0  DA 8 C DA 9 C DA 10 C DC 11 C DA 12 C DA 13 C DA
14 C DT 15 C DT 17 C DT 18 C DC 19 C DA 6 D DA 8
D DA 9 D DT 10 D DT 11 D MG 603 I
5 1.36 1.72 122.6 -2.37 -0.59 27.9 80 14 8 2 3 2 2 0  DG 7 A DT 16 A DT 17 A DT 18 A DT 10 B DT 11 B MG
601 F
6 1.74 4.44 161.2 -1.27 -0.55 17.0 84 9 5 0 4 0 2 0  DG 7 A DA 8 A DA 9 A DA 18 B DT 19 B DA 20 B DG
21 B DG 7 C DA 8 C DA 9 C DT 17 C DT 18 C DC 19 C
DA 8 D DA 9 D DT 10 D DT 11 D DA 18 D DT 19 D DA
20 D DG 21 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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