PDBsum entry 2a07 Go to PDB code:  Tunnel analysis for: 2a07 calculated with MOLE 2.0 PDB id 2a07 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.42 25.5 -1.49 -0.29 21.8 79 5 0 1 4 1 0 0  DT 10 B DT 11 B DT 12 B DG 13 B 2 1.24 1.24 25.6 -1.68 -0.30 24.8 79 5 0 1 3 0 0 0  DT 10 B DT 11 B DT 12 B DG 13 B DT 14 B 3 1.41 1.41 28.9 -0.93 -0.53 6.2 85 2 0 1 2 2 1 0  DT 16 A DT 17 A DT 12 B DG 13 B 4 1.22 1.22 31.0 -1.24 -0.47 11.7 84 3 0 1 2 1 1 0  DT 16 A DT 17 A DT 12 B DG 13 B DT 14 B 5 1.36 1.36 37.5 -0.69 -0.11 13.6 88 4 0 3 5 1 0 0  DA 9 A DA 10 A DC 11 A DA 12 A DA 13 A DT 12 B DG 13 B 6 1.23 1.23 37.6 -0.55 0.01 16.1 90 4 0 3 4 0 0 0  DA 9 A DA 10 A DC 11 A DA 12 A DA 13 A DT 12 B DG 13 B DT 14 B 7 1.43 1.43 41.8 -0.87 0.09 21.9 75 6 1 1 3 2 0 0  DG 7 A DA 8 A DA 9 A DA 10 A DT 12 B DG 13 B MG 601 F 8 1.25 1.25 42.0 -0.99 0.10 24.1 75 6 1 1 2 1 0 0  DG 7 A DA 8 A DA 9 A DA 10 A DT 12 B DG 13 B DT 14 B MG 601 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.