PDBsum entry 1zmd Go to PDB code:  Pore analysis for: 1zmd calculated with MOLE 2.0 PDB id 1zmd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 37 pores, coloured by radius 37 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.33 2.73 25.5 1.12 0.66 9.3 71 3 0 0 3 2 1 0  NAI 481 A 2 1.48 1.78 30.6 -1.74 0.05 23.1 80 9 4 0 3 2 1 0  SO4 2000 A 3 2.12 2.66 31.2 -0.08 -0.22 9.3 82 3 1 1 4 0 1 2  FAD 480 B NAI 481 B 4 2.18 2.18 34.8 -0.17 -0.26 10.6 82 3 1 1 4 0 1 2  FAD 480 A NAI 481 A 5 2.22 2.22 38.0 -2.41 -0.53 32.8 83 3 4 2 4 1 0 0   6 3.24 3.36 48.0 -1.52 -0.21 23.4 85 6 8 4 7 2 0 0  SO4 2022 F 7 2.20 2.20 53.1 -0.41 -0.27 11.3 85 3 3 3 6 0 1 2  FAD 480 G NAI 481 G 8 0.89 1.47 56.1 -0.74 -0.19 19.2 78 6 5 2 7 3 0 0   9 0.95 1.47 62.4 -0.95 -0.32 19.8 85 7 7 2 9 1 0 0   10 1.61 1.74 76.1 -1.31 -0.37 22.5 82 5 10 6 7 1 1 0  SO4 2002 A SO4 2021 F 11 2.13 2.25 76.1 -2.23 -0.46 28.2 82 10 8 5 5 3 3 0  SO4 2022 F 12 2.25 2.52 77.6 -1.01 -0.29 17.2 83 6 7 4 7 2 1 2  FAD 480 F NAI 481 F SO4 2022 F 13 1.40 2.19 78.3 -1.75 -0.36 24.8 86 7 6 5 9 0 1 0   14 2.28 2.46 82.1 -0.75 -0.25 14.3 87 6 7 5 8 0 1 2  FAD 480 F NAI 481 F SO4 2022 F 15 2.13 2.26 85.3 -2.02 -0.41 25.4 85 11 9 7 7 1 3 0  SO4 2022 F 16 1.73 3.16 110.6 -1.77 -0.30 23.3 82 13 12 7 7 4 1 0  SO4 2022 F SO4 2023 G SO4 2027 H 17 1.50 2.63 114.5 -1.16 -0.19 20.4 85 10 12 6 13 3 1 0  SO4 2023 G SO4 2027 H 18 1.82 3.37 114.3 -1.47 -0.26 21.5 80 13 11 3 6 3 1 0  SO4 2023 G SO4 2027 H 19 1.81 3.11 115.3 -1.59 -0.31 20.0 84 13 11 5 8 2 1 0  SO4 2022 F SO4 2023 G SO4 2027 H 20 1.35 2.11 116.7 -1.45 -0.36 22.9 84 11 10 7 12 3 2 0  SO4 2022 F 21 2.15 2.28 120.7 -1.57 -0.44 20.7 83 11 9 6 8 1 4 2  FAD 480 F NAI 481 F SO4 2022 F 22 1.56 2.51 129.3 -1.16 -0.32 20.2 86 10 9 7 11 2 0 0   23 1.60 1.82 135.6 -1.50 -0.34 22.7 86 13 11 13 12 3 0 0  SO4 2002 A SO4 2021 F SO4 2022 F 24 1.56 2.93 138.4 -1.29 -0.37 18.8 88 10 10 9 13 1 0 0  SO4 2022 F 25 1.86 3.34 150.5 -1.28 -0.34 17.1 83 13 10 6 9 2 2 2  FAD 480 F NAI 481 F SO4 2022 F SO4 2023 G SO4 2027 H 26 1.92 2.66 151.7 -2.08 -0.37 26.6 82 19 13 5 7 2 3 0  SO4 2023 G SO4 2027 H 27 1.60 2.30 173.5 -1.11 -0.39 17.0 86 11 9 10 14 1 1 2  FAD 480 F NAI 481 F SO4 2022 F 28 1.62 2.84 174.8 -1.84 -0.42 26.6 85 17 12 9 12 1 2 0   29 1.70 1.84 195.2 -1.60 -0.34 23.4 83 19 16 7 14 3 2 0  SO4 2023 G SO4 2027 H 30 1.31 1.80 215.2 -1.31 -0.36 22.8 85 17 14 11 19 2 1 0   31 0.87 1.53 47.1 -0.73 -0.17 18.9 81 5 5 3 7 3 0 0   32 1.72 2.06 33.0 -1.45 -0.01 21.8 81 7 6 2 4 2 1 0  SO4 2011 D 33 1.47 2.07 70.9 -1.15 -0.28 22.3 86 6 5 2 9 0 0 0   34 2.13 2.12 40.1 -0.56 -0.37 11.5 84 3 2 1 5 0 1 2  FAD 480 H NAI 481 H 35 2.20 2.34 31.1 0.10 -0.19 8.3 82 3 1 1 4 0 1 2  FAD 480 C NAI 481 C 36 1.83 2.53 41.1 -1.53 -0.09 22.9 81 7 7 1 4 2 1 0  SO4 2015 E SO4 2019 F 37 2.08 2.36 38.4 -0.01 -0.24 8.7 79 3 1 1 6 1 1 1  FAD 480 E NAI 481 E Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.