 |
PDBsum entry 1zmd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1zmd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1zmd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
6 tunnels,
coloured by tunnel radius |
|
22 tunnels,
coloured by
tunnel radius
|
22 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.25 |
2.03 |
32.6 |
1.26 |
0.28 |
8.9 |
75 |
|
2 |
1 |
1 |
10 |
1 |
0 |
0 |
|
FAD 480 D NAI 481 D SO4 2014 D
|
 |
|
2 |
 |
1.26 |
1.89 |
37.5 |
1.16 |
0.26 |
9.6 |
72 |
2 |
1 |
1 |
11 |
2 |
0 |
0 |
FAD 480 D NAI 481 D
|
|
3 |
 |
1.25 |
2.27 |
48.6 |
-0.69 |
-0.34 |
14.2 |
75 |
4 |
4 |
3 |
7 |
2 |
1 |
2 |
FAD 480 D NAI 481 D
|
|
4 |
 |
1.49 |
1.69 |
36.4 |
-1.22 |
-0.42 |
20.7 |
82 |
4 |
7 |
2 |
4 |
1 |
1 |
0 |
SO4 2007 C
|
|
5 |
 |
1.50 |
1.73 |
38.4 |
-1.57 |
-0.30 |
24.6 |
80 |
5 |
7 |
1 |
4 |
2 |
0 |
0 |
SO4 2011 D
|
|
6 |
 |
1.44 |
1.84 |
38.8 |
-2.32 |
-0.34 |
26.8 |
81 |
6 |
4 |
3 |
2 |
3 |
2 |
0 |
SO4 2007 C
|
|
7 |
 |
1.45 |
1.85 |
42.0 |
-2.19 |
-0.09 |
26.2 |
81 |
9 |
4 |
2 |
2 |
3 |
1 |
0 |
SO4 2011 D
|
|
8 |
 |
1.16 |
1.51 |
38.6 |
1.35 |
0.35 |
8.2 |
74 |
3 |
1 |
1 |
10 |
1 |
0 |
1 |
FAD 480 H NAI 481 H SO4 2030 H
|
|
9 |
 |
1.14 |
1.51 |
40.2 |
1.25 |
0.35 |
8.2 |
75 |
3 |
1 |
1 |
11 |
1 |
0 |
1 |
FAD 480 H NAI 481 H SO4 2030 H
|
|
10 |
 |
1.17 |
1.94 |
40.5 |
1.25 |
0.34 |
8.8 |
71 |
2 |
1 |
1 |
11 |
2 |
0 |
1 |
FAD 480 H NAI 481 H
|
|
11 |
 |
1.17 |
1.51 |
42.1 |
1.18 |
0.34 |
8.6 |
73 |
3 |
1 |
1 |
12 |
2 |
0 |
1 |
FAD 480 H NAI 481 H
|
|
12 |
|
1.16 |
1.51 |
46.2 |
-0.19 |
-0.23 |
10.9 |
75 |
3 |
4 |
2 |
7 |
1 |
1 |
2 |
FAD 480 H NAI 481 H
|
|
13 |
|
1.19 |
1.96 |
47.8 |
-0.23 |
-0.20 |
11.1 |
76 |
3 |
4 |
2 |
8 |
1 |
1 |
2 |
FAD 480 H NAI 481 H
|
|
14 |
|
1.21 |
1.46 |
33.0 |
1.35 |
0.35 |
7.0 |
74 |
3 |
1 |
1 |
10 |
1 |
0 |
1 |
FAD 480 C NAI 481 C
|
|
15 |
|
1.22 |
2.06 |
44.3 |
-0.02 |
-0.12 |
10.3 |
75 |
3 |
2 |
2 |
7 |
1 |
1 |
2 |
FAD 480 C NAI 481 C
|
|
16 |
|
1.60 |
1.80 |
35.1 |
-1.39 |
-0.46 |
20.8 |
81 |
2 |
8 |
2 |
4 |
1 |
1 |
0 |
SO4 2015 E
|
|
17 |
|
1.60 |
1.75 |
35.4 |
-1.44 |
-0.27 |
23.6 |
80 |
5 |
7 |
1 |
4 |
2 |
0 |
0 |
SO4 2019 F
|
|
18 |
|
1.35 |
1.48 |
39.3 |
-2.23 |
-0.29 |
23.8 |
83 |
5 |
4 |
4 |
3 |
3 |
2 |
0 |
SO4 2015 E
|
|
19 |
|
1.36 |
1.48 |
42.9 |
-2.09 |
-0.10 |
24.7 |
83 |
9 |
4 |
3 |
3 |
3 |
1 |
0 |
SO4 2019 F
|
|
20 |
|
1.17 |
1.45 |
33.9 |
1.33 |
0.33 |
7.0 |
74 |
3 |
1 |
1 |
10 |
1 |
0 |
1 |
FAD 480 E NAI 481 E
|
|
21 |
|
1.22 |
1.46 |
37.9 |
0.87 |
0.17 |
9.0 |
82 |
1 |
3 |
2 |
9 |
1 |
1 |
0 |
FAD 480 E
|
 |
22 |
|
1.19 |
1.45 |
40.3 |
0.05 |
-0.18 |
9.0 |
72 |
3 |
2 |
2 |
6 |
2 |
1 |
1 |
FAD 480 E NAI 481 E
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program