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PDBsum entry 1zbh

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1zbh calculated with MOLE 2.0 PDB id
1zbh
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.56 1.69 25.1 -1.71 -0.24 24.6 83 2 2 3 1 2 0 0  U 9 E A 18 E G 19 E C 20 E
2 2.59 2.59 31.1 -1.40 -0.33 18.2 79 2 2 2 2 3 0 0  
3 1.43 1.43 32.5 -1.52 -0.60 19.0 73 3 1 2 0 2 0 1  G 6 F G 7 F C 8 F U 11 F U 12 F A 16 F A 18 F G
19 F C 20 F
4 2.59 2.59 34.0 -2.28 -0.47 23.4 78 3 4 2 1 3 0 0  
5 1.41 1.40 37.6 -1.61 -0.59 17.2 75 5 1 2 0 2 0 1  U 11 F U 12 F A 18 F G 19 F C 20 F C 21 F
6 3.26 4.65 45.1 -1.89 -0.31 25.7 76 4 6 2 3 3 1 1  
7 2.59 2.59 49.8 -1.19 -0.23 21.8 82 3 5 4 5 3 0 0  U 11 F U 12 F
8 3.00 3.11 50.9 -1.05 -0.04 15.8 79 5 3 5 3 4 0 1  
9 2.96 3.09 52.0 -1.33 -0.16 21.4 78 4 5 3 4 3 0 0  
10 2.99 3.12 61.3 -0.51 -0.12 11.5 82 2 3 5 4 3 0 0  
11 2.24 3.03 62.8 -1.14 -0.09 12.4 76 2 1 2 3 3 1 0  AMP 2002 B
12 2.97 3.10 62.9 -0.18 -0.06 9.5 86 2 2 6 5 3 0 0  
13 3.08 4.48 66.6 -0.54 0.05 16.4 81 5 5 6 6 3 0 1  
14 1.90 1.90 61.1 -2.48 -0.35 22.2 84 7 1 6 1 1 0 0  AMP 4002 D G 6 E C 8 E A 16 E G 19 E C 20 E C 21 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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