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PDBsum entry 1zbh

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1zbh calculated with MOLE 2.0 PDB id
1zbh
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.11 1.26 28.5 0.17 0.13 12.8 71 1 3 2 6 3 0 0  
2 1.11 1.27 29.4 0.00 0.08 13.4 70 2 3 2 7 3 0 0  
3 1.13 1.26 32.2 0.50 0.21 11.7 70 1 3 2 7 3 0 0  
4 1.16 1.24 33.8 -0.48 -0.22 16.5 72 2 4 1 5 2 0 0  
5 1.11 1.21 37.5 -0.18 -0.13 14.9 71 2 4 1 6 2 0 0  
6 1.17 1.99 17.1 -0.93 -0.45 9.7 80 0 1 3 1 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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