PDBsum entry 1yau Go to PDB code:  Pore analysis for: 1yau calculated with MOLE 2.0 PDB id 1yau Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   28 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.51 2.69 38.8 -1.89 -0.43 20.8 92 5 2 5 4 0 0 0   2 1.58 2.91 50.6 -1.94 -0.53 23.1 91 9 5 7 5 0 0 0  SO4 3016 I 3 1.97 1.99 50.5 -1.89 -0.63 24.3 86 7 4 3 1 0 0 0   4 1.34 3.48 53.7 -1.36 -0.48 17.6 89 10 4 6 5 0 0 0  SO4 3020 M 5 1.92 1.91 56.8 -2.07 -0.50 28.6 81 9 7 4 1 2 0 0   6 1.45 2.99 72.2 -1.77 -0.38 26.5 85 12 8 7 6 2 0 0  SO4 3004 E SO4 3018 K 7 1.74 1.72 73.2 -1.31 -0.36 20.0 76 7 9 3 3 4 1 0   8 1.53 3.01 74.9 -1.96 -0.41 26.2 89 11 5 8 5 0 0 0  SO4 3004 E SO4 3018 K 9 1.72 1.72 83.7 -1.72 -0.41 27.8 82 11 11 3 5 2 1 0   10 1.30 1.28 93.9 -2.20 -0.50 23.9 84 11 7 8 4 2 1 0  SO4 3003 D 11 1.43 1.71 94.9 -1.29 -0.37 18.1 85 9 6 8 7 3 1 0  SO4 3003 D SO4 3011 I 12 1.38 3.39 98.4 -2.19 -0.55 28.5 88 17 9 11 5 0 0 0  SO4 3004 E SO4 3018 K 13 1.78 1.76 101.4 -1.78 -0.48 25.6 83 13 11 5 5 2 1 0   14 1.47 1.50 103.6 -2.77 -0.63 31.7 84 12 8 8 3 0 0 0  SO4 3005 F SO4 3019 L 15 2.02 2.01 112.5 -2.69 -0.75 32.3 86 18 12 11 0 0 0 0   16 1.57 1.58 123.8 -2.14 -0.47 24.0 83 14 8 10 7 2 1 0  SO4 3002 C SO4 3003 D SO4 3016 I 17 1.27 1.56 127.1 -0.96 -0.35 15.4 86 9 8 9 12 2 1 0  SO4 3004 E SO4 3011 I SO4 3012 J 18 1.22 1.24 136.5 -1.87 -0.50 23.8 84 12 10 8 8 1 0 0   19 1.48 1.51 140.7 -1.66 -0.35 18.5 84 15 5 11 10 2 0 0  SO4 3005 F SO4 3006 G SO4 3020 M 20 1.75 1.79 147.1 -1.14 -0.43 16.5 89 9 9 11 15 2 0 0  SO4 3008 H SO4 3023 I 21 1.44 1.49 163.7 -0.74 -0.28 13.6 85 9 8 10 16 3 2 0  SO4 3005 F SO4 3011 I SO4 3012 J SO4 3013 K 22 1.90 2.80 166.7 -1.39 -0.42 19.5 87 12 10 12 14 3 0 0  SO4 3008 H SO4 3023 I 23 1.51 1.63 187.1 -1.66 -0.44 20.1 88 12 10 13 12 1 0 0   24 1.44 1.98 206.7 -1.78 -0.41 22.5 85 15 11 13 11 3 0 0   25 1.87 1.93 213.9 -1.03 -0.34 16.9 85 14 12 14 16 3 2 0  SO4 3011 I SO4 3012 J SO4 3013 K 26 1.55 1.55 220.9 -0.61 -0.25 13.1 86 10 9 17 24 2 2 0  SO4 3006 G SO4 3011 I SO4 3012 J SO4 3013 K SO4 3014 L 27 1.32 1.76 243.9 -1.55 -0.44 22.4 86 20 18 13 11 2 1 0   28 1.28 1.30 252.7 -1.73 -0.41 21.7 86 20 12 18 13 4 0 0   29 1.09 1.63 282.0 -1.85 -0.46 25.6 83 26 21 13 11 2 0 0   30 1.18 1.10 285.6 -1.82 -0.49 22.1 85 29 20 20 11 5 0 0  SO4 3014 L 31 1.25 3.73 181.0 -1.56 -0.53 18.6 76 12 7 5 9 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.