 |
PDBsum entry 1vzu
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1vzu calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1vzu
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
0 pores,
coloured by radius |
|
3 pores,
coloured by radius
|
3 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.73 |
2.31 |
59.3 |
-1.58 |
0.02 |
20.1 |
78 |
|
8 |
6 |
6 |
4 |
6 |
1 |
0 |
|
UDP 2371 B GAL 2 D
|
 |
|
2 |
 |
1.36 |
1.65 |
28.2 |
-1.26 |
0.07 |
21.2 |
78 |
4 |
3 |
2 |
4 |
5 |
0 |
0 |
UDP 1371 A BGC 1 C GAL 2 C
|
 |
3 |
 |
1.68 |
1.83 |
28.5 |
-1.40 |
0.04 |
17.2 |
73 |
4 |
2 |
3 |
2 |
5 |
1 |
0 |
UDP 1371 A BGC 1 C GAL 2 C
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program